Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06430 and BPHYT_RS06435 are separated by 258 nucleotides BPHYT_RS06435 and BPHYT_RS06440 overlap by 1 nucleotides BPHYT_RS06440 and BPHYT_RS06445 overlap by 4 nucleotides
BPHYT_RS06430: BPHYT_RS06430 - quinone oxidoreductase, at 1,462,541 to 1,463,515
_RS06430
BPHYT_RS06435: BPHYT_RS06435 - hypothetical protein, at 1,463,774 to 1,463,884
_RS06435
BPHYT_RS06440: BPHYT_RS06440 - ATPase, at 1,463,884 to 1,463,976
_RS06440
BPHYT_RS06445: BPHYT_RS06445 - ATPase, at 1,463,973 to 1,465,778
_RS06445
Position (kb) 1463
1464 Strain fitness (log2 ratio) -2
-1
0
1 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.926 kb on - strand, within BPHYT_RS06430 at 1462.944 kb on - strand, within BPHYT_RS06430 at 1463.111 kb on + strand, within BPHYT_RS06430 at 1463.178 kb on - strand, within BPHYT_RS06430 at 1463.178 kb on - strand, within BPHYT_RS06430 at 1463.343 kb on - strand, within BPHYT_RS06430 at 1463.590 kb on + strand at 1463.686 kb on + strand at 1463.732 kb on + strand at 1463.787 kb on - strand, within BPHYT_RS06435 at 1463.787 kb on - strand, within BPHYT_RS06435 at 1463.944 kb on + strand, within BPHYT_RS06440 at 1463.945 kb on - strand, within BPHYT_RS06440 at 1464.166 kb on - strand, within BPHYT_RS06445 at 1464.213 kb on + strand, within BPHYT_RS06445 at 1464.333 kb on + strand, within BPHYT_RS06445 at 1464.333 kb on + strand, within BPHYT_RS06445 at 1464.507 kb on + strand, within BPHYT_RS06445 at 1464.508 kb on - strand, within BPHYT_RS06445 at 1464.583 kb on - strand, within BPHYT_RS06445 at 1464.616 kb on - strand, within BPHYT_RS06445
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 1,462,925 + BPHYT_RS06430 0.39 -0.6 1,462,925 + BPHYT_RS06430 0.39 -0.2 1,462,925 + BPHYT_RS06430 0.39 -1.9 1,462,925 + BPHYT_RS06430 0.39 -0.4 1,462,926 - BPHYT_RS06430 0.39 -0.3 1,462,944 - BPHYT_RS06430 0.41 -0.6 1,463,111 + BPHYT_RS06430 0.58 +0.5 1,463,178 - BPHYT_RS06430 0.65 +0.0 1,463,178 - BPHYT_RS06430 0.65 -0.2 1,463,343 - BPHYT_RS06430 0.82 -0.4 1,463,590 + -0.2 1,463,686 + -0.1 1,463,732 + -0.1 1,463,787 - BPHYT_RS06435 0.12 +1.0 1,463,787 - BPHYT_RS06435 0.12 +0.4 1,463,944 + BPHYT_RS06440 0.65 -1.1 1,463,945 - BPHYT_RS06440 0.66 -1.1 1,464,166 - BPHYT_RS06445 0.11 -0.5 1,464,213 + BPHYT_RS06445 0.13 -0.1 1,464,333 + BPHYT_RS06445 0.20 +0.4 1,464,333 + BPHYT_RS06445 0.20 +1.1 1,464,507 + BPHYT_RS06445 0.30 -1.0 1,464,508 - BPHYT_RS06445 0.30 +0.4 1,464,583 - BPHYT_RS06445 0.34 -1.7 1,464,616 - BPHYT_RS06445 0.36 -0.4
Or see this region's nucleotide sequence