Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06320

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06315 and BPHYT_RS06320 are separated by 75 nucleotidesBPHYT_RS06320 and BPHYT_RS06325 are separated by 10 nucleotides BPHYT_RS06315: BPHYT_RS06315 - histidine kinase, at 1,438,463 to 1,440,109 _RS06315 BPHYT_RS06320: BPHYT_RS06320 - chemotaxis protein CheY, at 1,440,185 to 1,440,622 _RS06320 BPHYT_RS06325: BPHYT_RS06325 - ATPase, at 1,440,633 to 1,443,008 _RS06325 Position (kb) 1440 1441Strain fitness (log2 ratio) -2 -1 0 1at 1439.594 kb on - strand, within BPHYT_RS06315at 1439.699 kb on - strand, within BPHYT_RS06315at 1439.699 kb on - strand, within BPHYT_RS06315at 1440.285 kb on + strand, within BPHYT_RS06320at 1440.286 kb on - strand, within BPHYT_RS06320at 1440.618 kb on - strandat 1440.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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1,439,594 - BPHYT_RS06315 0.69 -0.4
1,439,699 - BPHYT_RS06315 0.75 +0.3
1,439,699 - BPHYT_RS06315 0.75 +0.3
1,440,285 + BPHYT_RS06320 0.23 +0.2
1,440,286 - BPHYT_RS06320 0.23 -1.9
1,440,618 - +1.2
1,440,757 - +0.4

Or see this region's nucleotide sequence