Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06260 and BPHYT_RS06265 are separated by 157 nucleotides BPHYT_RS06265 and BPHYT_RS06270 are separated by 36 nucleotides BPHYT_RS06270 and BPHYT_RS06275 are separated by 129 nucleotides
BPHYT_RS06260: BPHYT_RS06260 - MFS transporter, at 1,428,615 to 1,429,826
_RS06260
BPHYT_RS06265: BPHYT_RS06265 - 3-demethylubiquinone-9 3-methyltransferase, at 1,429,984 to 1,430,457
_RS06265
BPHYT_RS06270: BPHYT_RS06270 - glyoxalase, at 1,430,494 to 1,430,961
_RS06270
BPHYT_RS06275: BPHYT_RS06275 - hydrolase, at 1,431,091 to 1,432,686
_RS06275
Position (kb) 1429
1430
1431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1429.069 kb on + strand, within BPHYT_RS06260 at 1429.070 kb on - strand, within BPHYT_RS06260 at 1429.865 kb on - strand at 1430.351 kb on + strand, within BPHYT_RS06265 at 1430.351 kb on + strand, within BPHYT_RS06265 at 1430.396 kb on + strand, within BPHYT_RS06265 at 1430.397 kb on - strand, within BPHYT_RS06265 at 1430.571 kb on + strand, within BPHYT_RS06270 at 1430.601 kb on - strand, within BPHYT_RS06270 at 1430.693 kb on + strand, within BPHYT_RS06270 at 1430.694 kb on - strand, within BPHYT_RS06270 at 1430.696 kb on + strand, within BPHYT_RS06270 at 1431.040 kb on + strand at 1431.283 kb on + strand, within BPHYT_RS06275 at 1431.283 kb on + strand, within BPHYT_RS06275 at 1431.284 kb on - strand, within BPHYT_RS06275 at 1431.338 kb on + strand, within BPHYT_RS06275 at 1431.338 kb on + strand, within BPHYT_RS06275 at 1431.362 kb on + strand, within BPHYT_RS06275 at 1431.401 kb on + strand, within BPHYT_RS06275
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 1,429,069 + BPHYT_RS06260 0.37 -1.0 1,429,070 - BPHYT_RS06260 0.38 +0.7 1,429,865 - +1.2 1,430,351 + BPHYT_RS06265 0.77 -2.9 1,430,351 + BPHYT_RS06265 0.77 +0.1 1,430,396 + BPHYT_RS06265 0.87 -0.4 1,430,397 - BPHYT_RS06265 0.87 -0.1 1,430,571 + BPHYT_RS06270 0.16 +0.1 1,430,601 - BPHYT_RS06270 0.23 -2.3 1,430,693 + BPHYT_RS06270 0.43 -0.4 1,430,694 - BPHYT_RS06270 0.43 +0.7 1,430,696 + BPHYT_RS06270 0.43 +0.6 1,431,040 + -0.4 1,431,283 + BPHYT_RS06275 0.12 -0.6 1,431,283 + BPHYT_RS06275 0.12 +0.1 1,431,284 - BPHYT_RS06275 0.12 +0.7 1,431,338 + BPHYT_RS06275 0.15 +0.4 1,431,338 + BPHYT_RS06275 0.15 -1.4 1,431,362 + BPHYT_RS06275 0.17 +2.2 1,431,401 + BPHYT_RS06275 0.19 -0.1
Or see this region's nucleotide sequence