Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05575

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
1,278,407	-				+0.4
1,278,407	-				+0.2
1,278,699	-		BPHYT_RS05565	0.75	-0.8
1,278,699	-		BPHYT_RS05565	0.75	+0.2
1,278,895	+		BPHYT_RS05570	0.25	+0.8
1,279,094	+				-0.3
1,279,185	+				+1.3
1,279,186	-				+1.0
1,279,191	-				+2.4
1,279,194	+				+0.2
1,279,198	+				-1.3
1,279,239	-				+2.4
1,279,305	+				+1.0
1,279,305	+				+0.0
1,279,305	+				-0.0
1,279,306	-				+2.2
1,279,306	-				+2.5
1,279,416	+				+2.5
1,279,416	+				+2.6
1,279,416	+				+3.3
1,279,417	-				+2.7
1,279,417	-				+2.8
1,279,417	-				+2.6
1,279,417	-				+2.2
1,279,417	-				+2.9
1,279,417	-				+2.8
1,279,417	-				+2.8
1,279,555	+		BPHYT_RS05575	0.11	+2.4
1,279,697	+		BPHYT_RS05575	0.21	+2.4
1,279,697	+		BPHYT_RS05575	0.21	+2.6
1,280,088	-		BPHYT_RS05575	0.49	+2.7
1,280,301	-		BPHYT_RS05575	0.64	+2.8
1,280,395	+		BPHYT_RS05575	0.71	+2.9
1,280,396	-		BPHYT_RS05575	0.71	+2.8
1,280,396	-		BPHYT_RS05575	0.71	+2.1
1,280,396	-		BPHYT_RS05575	0.71	+2.7
1,280,492	+		BPHYT_RS05575	0.78	+2.3
1,280,492	+		BPHYT_RS05575	0.78	+2.4
1,280,493	-		BPHYT_RS05575	0.78	+2.4
1,280,493	-		BPHYT_RS05575	0.78	+2.6
1,280,493	-		BPHYT_RS05575	0.78	+2.9
1,280,493	-		BPHYT_RS05575	0.78	+2.7
1,280,493	-				+3.1
1,280,717	+				+1.9
1,280,717	+				+1.7
1,280,718	-				+2.8
1,280,718	-				+2.5
1,280,718	-				+2.4
1,280,718	-				+2.8
1,280,718	-				+2.4
1,280,718	-				+2.5
1,280,720	-				+2.2
1,280,829	+				+0.4
1,280,829	+				-0.7
1,280,830	-				+0.0
1,280,903	+				-1.5
1,280,909	+				-0.9
1,280,909	+				+0.1
1,280,910	-				+0.3
1,280,920	-				+1.0
1,280,920	-				-0.0
1,280,920	-				+0.4
1,280,920	-				-0.6
1,280,920	-				+0.5
1,281,030	-		BPHYT_RS05580	0.44	-0.1
1,281,030	-		BPHYT_RS05580	0.44	-0.2
1,281,170	-				+0.6
1,281,170	-				+0.6
1,281,231	-				+1.5
1,281,237	+				-0.3
1,281,238	-				+1.9
1,281,238	-				+1.8
1,281,269	-				+1.5
1,281,269	-				+2.5
1,281,269	-				+0.6
1,281,290	+				+0.7
1,281,291	-				+1.8
1,281,515	-		BPHYT_RS05585	0.39	+1.3
1,281,722	-				+1.7
1,281,722	-				+1.4