Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05560

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
1,276,386	-		BPHYT_RS05555	0.51	-1.4
1,276,750	-				-0.8
1,276,750	-				+2.3
1,276,781	+				+0.2
1,276,781	+				-0.1
1,276,781	+				-1.2
1,276,788	-				-0.0
1,276,937	-				-1.5
1,276,969	-				-0.8
1,277,085	+				+2.6
1,277,205	-		BPHYT_RS05560	0.17	+2.5
1,277,327	+		BPHYT_RS05560	0.28	+2.4
1,277,328	-		BPHYT_RS05560	0.28	+0.1
1,277,328	-		BPHYT_RS05560	0.28	+2.4
1,277,944	-		BPHYT_RS05560	0.86	+2.3
1,277,973	+		BPHYT_RS05560	0.89	+2.3
1,277,973	+		BPHYT_RS05560	0.89	+2.1
1,277,973	+		BPHYT_RS05560	0.89	+2.1
1,277,974	-		BPHYT_RS05560	0.89	+2.8
1,278,089	-				+2.2
1,278,163	+				+2.0
1,278,182	+				+1.8
1,278,361	+				+0.1
1,278,361	+				-1.1
1,278,361	+				-1.0
1,278,361	+				-1.0
1,278,361	+				-1.2
1,278,361	+				-0.1
1,278,361	+				-0.3
1,278,361	+				-0.0
1,278,361	+				-0.4
1,278,361	+				-0.3
1,278,362	-				-0.0
1,278,362	-				-0.2
1,278,362	-				+0.3
1,278,362	-				-2.1
1,278,407	-				+0.4
1,278,407	-				+0.2
1,278,699	-		BPHYT_RS05565	0.75	-0.8
1,278,699	-		BPHYT_RS05565	0.75	+0.2
1,278,895	+		BPHYT_RS05570	0.25	+0.8