Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03450 and BPHYT_RS03455 are separated by 7 nucleotides BPHYT_RS03455 and BPHYT_RS03460 overlap by 8 nucleotides BPHYT_RS03460 and BPHYT_RS03465 overlap by 4 nucleotides
BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586
_RS03450
BPHYT_RS03455: BPHYT_RS03455 - paraquat-inducible protein A, at 778,594 to 779,256
_RS03455
BPHYT_RS03460: BPHYT_RS03460 - mammalian cell entry protein, at 779,249 to 780,907
_RS03460
BPHYT_RS03465: BPHYT_RS03465 - hypothetical protein, at 780,904 to 781,650
_RS03465
Position (kb) 779
780
781 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 778.273 kb on + strand, within BPHYT_RS03450 at 778.274 kb on - strand, within BPHYT_RS03450 at 778.600 kb on + strand at 778.601 kb on - strand at 778.601 kb on - strand at 778.775 kb on - strand, within BPHYT_RS03455 at 778.776 kb on + strand, within BPHYT_RS03455 at 778.777 kb on - strand, within BPHYT_RS03455 at 778.859 kb on - strand, within BPHYT_RS03455 at 779.201 kb on + strand at 779.201 kb on + strand at 779.202 kb on - strand at 779.202 kb on - strand at 779.224 kb on - strand at 779.254 kb on + strand at 779.510 kb on + strand, within BPHYT_RS03460 at 779.511 kb on - strand, within BPHYT_RS03460 at 779.677 kb on + strand, within BPHYT_RS03460 at 779.678 kb on - strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 780.285 kb on - strand, within BPHYT_RS03460 at 780.473 kb on + strand, within BPHYT_RS03460 at 780.473 kb on + strand, within BPHYT_RS03460 at 780.474 kb on - strand, within BPHYT_RS03460 at 780.487 kb on + strand, within BPHYT_RS03460 at 781.022 kb on - strand, within BPHYT_RS03465 at 781.023 kb on + strand, within BPHYT_RS03465 at 781.038 kb on + strand, within BPHYT_RS03465 at 781.276 kb on + strand, within BPHYT_RS03465 at 781.276 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.443 kb on + strand, within BPHYT_RS03465 at 781.528 kb on - strand, within BPHYT_RS03465 at 781.707 kb on - strand at 781.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 778,273 + BPHYT_RS03450 0.60 -1.1 778,274 - BPHYT_RS03450 0.60 +0.8 778,600 + -2.2 778,601 - +0.9 778,601 - +4.8 778,775 - BPHYT_RS03455 0.27 +2.8 778,776 + BPHYT_RS03455 0.27 +0.8 778,777 - BPHYT_RS03455 0.28 +1.3 778,859 - BPHYT_RS03455 0.40 +0.2 779,201 + -0.0 779,201 + +0.7 779,202 - +1.4 779,202 - +0.7 779,224 - -0.2 779,254 + +1.0 779,510 + BPHYT_RS03460 0.16 -0.5 779,511 - BPHYT_RS03460 0.16 +0.5 779,677 + BPHYT_RS03460 0.26 +1.7 779,678 - BPHYT_RS03460 0.26 -0.3 779,699 + BPHYT_RS03460 0.27 +1.2 779,699 + BPHYT_RS03460 0.27 +1.0 779,699 + BPHYT_RS03460 0.27 -0.2 779,770 + BPHYT_RS03460 0.31 +2.3 779,770 + BPHYT_RS03460 0.31 +0.1 779,770 + BPHYT_RS03460 0.31 +1.9 779,770 + BPHYT_RS03460 0.31 +0.8 780,285 - BPHYT_RS03460 0.62 -0.1 780,473 + BPHYT_RS03460 0.74 +1.3 780,473 + BPHYT_RS03460 0.74 +0.3 780,474 - BPHYT_RS03460 0.74 +1.1 780,487 + BPHYT_RS03460 0.75 +0.6 781,022 - BPHYT_RS03465 0.16 +0.9 781,023 + BPHYT_RS03465 0.16 +1.3 781,038 + BPHYT_RS03465 0.18 +0.7 781,276 + BPHYT_RS03465 0.50 +0.7 781,276 + BPHYT_RS03465 0.50 -0.7 781,309 + BPHYT_RS03465 0.54 -1.3 781,309 + BPHYT_RS03465 0.54 +0.5 781,309 + BPHYT_RS03465 0.54 +0.8 781,443 + BPHYT_RS03465 0.72 -0.1 781,528 - BPHYT_RS03465 0.84 -1.5 781,707 - -0.5 781,890 + -0.0
Or see this region's nucleotide sequence