Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03430 and BPHYT_RS03435 are separated by 279 nucleotides BPHYT_RS03435 and BPHYT_RS03440 are separated by 68 nucleotides BPHYT_RS03440 and BPHYT_RS03445 are separated by 8 nucleotides
BPHYT_RS03430: BPHYT_RS03430 - major facilitator transporter, at 774,064 to 775,341
_RS03430
BPHYT_RS03435: BPHYT_RS03435 - polyisoprenoid-binding protein, at 775,621 to 776,190
_RS03435
BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822
_RS03440
BPHYT_RS03445: BPHYT_RS03445 - cytochrome B561, at 776,831 to 777,391
_RS03445
Position (kb) 775
776
777 Strain fitness (log2 ratio) -2
-1
0
1 at 774.720 kb on - strand, within BPHYT_RS03430 at 775.008 kb on - strand, within BPHYT_RS03430 at 775.232 kb on + strand at 775.438 kb on + strand at 775.622 kb on + strand at 775.622 kb on + strand at 775.623 kb on - strand at 775.676 kb on + strand at 775.701 kb on - strand, within BPHYT_RS03435 at 775.869 kb on + strand, within BPHYT_RS03435 at 775.881 kb on + strand, within BPHYT_RS03435 at 775.882 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 775.884 kb on - strand, within BPHYT_RS03435 at 776.100 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.124 kb on - strand, within BPHYT_RS03435 at 776.570 kb on - strand, within BPHYT_RS03440 at 776.570 kb on - strand, within BPHYT_RS03440 at 776.591 kb on - strand, within BPHYT_RS03440 at 776.591 kb on - strand, within BPHYT_RS03440 at 776.801 kb on - strand at 776.806 kb on + strand at 776.934 kb on + strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.022 kb on - strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.051 kb on + strand, within BPHYT_RS03445 at 777.057 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445 at 777.090 kb on + strand, within BPHYT_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 774,720 - BPHYT_RS03430 0.51 -0.5 775,008 - BPHYT_RS03430 0.74 -0.6 775,232 + -0.2 775,438 + -0.4 775,622 + -0.8 775,622 + -0.4 775,623 - -0.6 775,676 + +0.1 775,701 - BPHYT_RS03435 0.14 -0.2 775,869 + BPHYT_RS03435 0.44 +0.5 775,881 + BPHYT_RS03435 0.46 -0.9 775,882 - BPHYT_RS03435 0.46 -1.3 775,884 - BPHYT_RS03435 0.46 -0.2 775,884 - BPHYT_RS03435 0.46 -0.3 775,884 - BPHYT_RS03435 0.46 +0.1 775,884 - BPHYT_RS03435 0.46 -0.3 775,884 - BPHYT_RS03435 0.46 -0.3 775,884 - BPHYT_RS03435 0.46 +0.5 775,884 - BPHYT_RS03435 0.46 +0.0 776,100 - BPHYT_RS03435 0.84 -0.2 776,124 - BPHYT_RS03435 0.88 +0.5 776,124 - BPHYT_RS03435 0.88 -0.8 776,124 - BPHYT_RS03435 0.88 -0.4 776,570 - BPHYT_RS03440 0.55 +0.5 776,570 - BPHYT_RS03440 0.55 -1.1 776,591 - BPHYT_RS03440 0.59 -2.3 776,591 - BPHYT_RS03440 0.59 -0.3 776,801 - -0.2 776,806 + -1.6 776,934 + BPHYT_RS03445 0.18 -0.5 777,022 - BPHYT_RS03445 0.34 -0.7 777,022 - BPHYT_RS03445 0.34 +0.6 777,051 + BPHYT_RS03445 0.39 +0.2 777,051 + BPHYT_RS03445 0.39 -2.6 777,057 + BPHYT_RS03445 0.40 -0.6 777,090 + BPHYT_RS03445 0.46 +0.1 777,090 + BPHYT_RS03445 0.46 -0.7
Or see this region's nucleotide sequence