Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02735 and BPHYT_RS02740 are separated by 38 nucleotides BPHYT_RS02740 and BPHYT_RS02745 are separated by 109 nucleotides
BPHYT_RS02735: BPHYT_RS02735 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) <small>(from data)</small>, at 612,575 to 613,582
_RS02735
BPHYT_RS02740: BPHYT_RS02740 - N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) <small>(from data)</small>, at 613,621 to 616,185
_RS02740
BPHYT_RS02745: BPHYT_RS02745 - N-acetylglucosamine-specific PTS system, IIBC components (nagE) <small>(from data)</small>, at 616,295 to 618,070
_RS02745
Position (kb) 613
614
615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.016 kb on - strand at 613.016 kb on - strand, within BPHYT_RS02735 at 613.112 kb on - strand, within BPHYT_RS02735 at 613.432 kb on + strand, within BPHYT_RS02735 at 613.497 kb on - strand at 613.642 kb on - strand at 613.642 kb on - strand at 613.642 kb on - strand at 613.779 kb on + strand at 613.854 kb on + strand at 613.854 kb on + strand at 614.912 kb on - strand, within BPHYT_RS02740 at 614.913 kb on + strand, within BPHYT_RS02740 at 614.914 kb on - strand, within BPHYT_RS02740 at 615.430 kb on + strand, within BPHYT_RS02740 at 615.431 kb on - strand, within BPHYT_RS02740 at 615.431 kb on - strand, within BPHYT_RS02740 at 615.431 kb on - strand, within BPHYT_RS02740 at 615.691 kb on - strand, within BPHYT_RS02740 at 616.201 kb on + strand at 616.228 kb on + strand at 616.228 kb on + strand at 616.228 kb on + strand at 616.232 kb on + strand at 616.232 kb on + strand at 616.643 kb on + strand, within BPHYT_RS02745 at 616.752 kb on + strand, within BPHYT_RS02745 at 616.753 kb on - strand, within BPHYT_RS02745 at 617.174 kb on + strand, within BPHYT_RS02745 at 617.174 kb on + strand, within BPHYT_RS02745
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 613,013 + BPHYT_RS02735 0.43 -0.5 613,013 + BPHYT_RS02735 0.43 +1.6 613,013 + BPHYT_RS02735 0.43 +0.4 613,014 - BPHYT_RS02735 0.44 +2.2 613,014 - BPHYT_RS02735 0.44 +0.6 613,014 - BPHYT_RS02735 0.44 -0.6 613,014 - BPHYT_RS02735 0.44 -0.5 613,014 - BPHYT_RS02735 0.44 -0.7 613,014 - BPHYT_RS02735 0.44 +0.2 613,016 - +1.6 613,016 - BPHYT_RS02735 0.44 +0.5 613,112 - BPHYT_RS02735 0.53 +0.2 613,432 + BPHYT_RS02735 0.85 -0.9 613,497 - -1.4 613,642 - -0.2 613,642 - -1.0 613,642 - +0.1 613,779 + +0.1 613,854 + -0.6 613,854 + -0.4 614,912 - BPHYT_RS02740 0.50 -0.1 614,913 + BPHYT_RS02740 0.50 +1.2 614,914 - BPHYT_RS02740 0.50 +1.1 615,430 + BPHYT_RS02740 0.71 -1.4 615,431 - BPHYT_RS02740 0.71 -3.2 615,431 - BPHYT_RS02740 0.71 +1.7 615,431 - BPHYT_RS02740 0.71 +0.2 615,691 - BPHYT_RS02740 0.81 +0.4 616,201 + +0.5 616,228 + -0.4 616,228 + +0.5 616,228 + -0.9 616,232 + -1.2 616,232 + -0.8 616,643 + BPHYT_RS02745 0.20 -0.9 616,752 + BPHYT_RS02745 0.26 +1.2 616,753 - BPHYT_RS02745 0.26 +0.0 617,174 + BPHYT_RS02745 0.49 +0.8 617,174 + BPHYT_RS02745 0.49 -2.0
Or see this region's nucleotide sequence