Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02655 and BPHYT_RS02660 are separated by 36 nucleotides BPHYT_RS02660 and BPHYT_RS02665 are separated by 132 nucleotides BPHYT_RS02665 and BPHYT_RS02670 are separated by 181 nucleotides BPHYT_RS02670 and BPHYT_RS02675 are separated by 111 nucleotides
BPHYT_RS02655: BPHYT_RS02655 - cytochrome C oxidase assembly protein, at 599,282 to 599,920
_RS02655
BPHYT_RS02660: BPHYT_RS02660 - membrane protein, at 599,957 to 600,166
_RS02660
BPHYT_RS02665: BPHYT_RS02665 - MFS transporter, at 600,299 to 601,156
_RS02665
BPHYT_RS02670: BPHYT_RS02670 - membrane protein, at 601,338 to 601,547
_RS02670
BPHYT_RS02675: BPHYT_RS02675 - hypothetical protein, at 601,659 to 602,375
_RS02675
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 599.450 kb on - strand, within BPHYT_RS02655 at 599.470 kb on + strand, within BPHYT_RS02655 at 599.594 kb on + strand, within BPHYT_RS02655 at 599.594 kb on + strand, within BPHYT_RS02655 at 599.649 kb on - strand, within BPHYT_RS02655 at 599.673 kb on - strand, within BPHYT_RS02655 at 599.755 kb on - strand, within BPHYT_RS02655 at 600.124 kb on + strand, within BPHYT_RS02660 at 600.156 kb on + strand at 600.159 kb on + strand at 600.184 kb on + strand at 600.251 kb on + strand at 600.252 kb on - strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.326 kb on + strand at 600.466 kb on + strand, within BPHYT_RS02665 at 600.518 kb on + strand, within BPHYT_RS02665 at 600.518 kb on + strand, within BPHYT_RS02665 at 600.519 kb on - strand, within BPHYT_RS02665 at 600.519 kb on - strand, within BPHYT_RS02665 at 600.519 kb on - strand, within BPHYT_RS02665 at 600.614 kb on + strand, within BPHYT_RS02665 at 600.614 kb on + strand, within BPHYT_RS02665 at 600.614 kb on + strand, within BPHYT_RS02665 at 600.615 kb on - strand, within BPHYT_RS02665 at 600.615 kb on - strand, within BPHYT_RS02665 at 600.656 kb on + strand, within BPHYT_RS02665 at 600.657 kb on - strand, within BPHYT_RS02665 at 600.918 kb on - strand, within BPHYT_RS02665 at 600.918 kb on - strand, within BPHYT_RS02665 at 600.953 kb on + strand, within BPHYT_RS02665 at 600.954 kb on - strand, within BPHYT_RS02665 at 600.954 kb on - strand, within BPHYT_RS02665 at 600.954 kb on - strand at 601.039 kb on + strand, within BPHYT_RS02665 at 601.057 kb on + strand at 601.058 kb on - strand at 601.134 kb on - strand at 601.134 kb on - strand at 601.134 kb on - strand at 601.259 kb on + strand at 601.259 kb on + strand at 601.268 kb on - strand at 601.349 kb on - strand at 601.356 kb on - strand at 601.588 kb on - strand at 601.890 kb on + strand, within BPHYT_RS02675 at 601.890 kb on + strand, within BPHYT_RS02675 at 601.908 kb on + strand, within BPHYT_RS02675 at 601.908 kb on + strand, within BPHYT_RS02675 at 601.909 kb on - strand, within BPHYT_RS02675 at 601.929 kb on + strand, within BPHYT_RS02675 at 601.930 kb on - strand, within BPHYT_RS02675 at 601.965 kb on + strand, within BPHYT_RS02675 at 601.966 kb on - strand, within BPHYT_RS02675 at 601.966 kb on - strand, within BPHYT_RS02675 at 602.001 kb on - strand, within BPHYT_RS02675 at 602.001 kb on - strand, within BPHYT_RS02675 at 602.029 kb on - strand, within BPHYT_RS02675 at 602.092 kb on - strand, within BPHYT_RS02675
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 599,450 - BPHYT_RS02655 0.26 +1.0 599,470 + BPHYT_RS02655 0.29 +0.7 599,594 + BPHYT_RS02655 0.49 -0.6 599,594 + BPHYT_RS02655 0.49 -1.6 599,649 - BPHYT_RS02655 0.57 +1.4 599,673 - BPHYT_RS02655 0.61 +1.2 599,755 - BPHYT_RS02655 0.74 -0.3 600,124 + BPHYT_RS02660 0.80 +0.9 600,156 + -0.1 600,159 + +2.2 600,184 + +0.1 600,251 + -1.8 600,252 - +2.2 600,323 + +0.3 600,323 + +1.4 600,326 + +1.0 600,466 + BPHYT_RS02665 0.19 +1.3 600,518 + BPHYT_RS02665 0.26 +1.6 600,518 + BPHYT_RS02665 0.26 -0.5 600,519 - BPHYT_RS02665 0.26 +0.4 600,519 - BPHYT_RS02665 0.26 +1.1 600,519 - BPHYT_RS02665 0.26 +0.3 600,614 + BPHYT_RS02665 0.37 +0.8 600,614 + BPHYT_RS02665 0.37 +1.5 600,614 + BPHYT_RS02665 0.37 +0.9 600,615 - BPHYT_RS02665 0.37 +0.7 600,615 - BPHYT_RS02665 0.37 +1.4 600,656 + BPHYT_RS02665 0.42 +0.8 600,657 - BPHYT_RS02665 0.42 +1.1 600,918 - BPHYT_RS02665 0.72 -0.8 600,918 - BPHYT_RS02665 0.72 +0.6 600,953 + BPHYT_RS02665 0.76 +1.4 600,954 - BPHYT_RS02665 0.76 +1.0 600,954 - BPHYT_RS02665 0.76 +0.4 600,954 - +2.2 601,039 + BPHYT_RS02665 0.86 +1.6 601,057 + +2.8 601,058 - +0.7 601,134 - +1.6 601,134 - -0.2 601,134 - +1.5 601,259 + +0.0 601,259 + +0.9 601,268 - -0.3 601,349 - -0.1 601,356 - -1.6 601,588 - +0.6 601,890 + BPHYT_RS02675 0.32 +0.8 601,890 + BPHYT_RS02675 0.32 +0.0 601,908 + BPHYT_RS02675 0.35 -1.7 601,908 + BPHYT_RS02675 0.35 +0.2 601,909 - BPHYT_RS02675 0.35 +0.5 601,929 + BPHYT_RS02675 0.38 -0.8 601,930 - BPHYT_RS02675 0.38 -0.4 601,965 + BPHYT_RS02675 0.43 -0.3 601,966 - BPHYT_RS02675 0.43 -0.0 601,966 - BPHYT_RS02675 0.43 -2.2 602,001 - BPHYT_RS02675 0.48 +0.6 602,001 - BPHYT_RS02675 0.48 +0.4 602,029 - BPHYT_RS02675 0.52 -0.1 602,092 - BPHYT_RS02675 0.60 +0.6
Or see this region's nucleotide sequence