Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01730 and BPHYT_RS01735 are separated by 27 nucleotides BPHYT_RS01735 and BPHYT_RS01740 are separated by 104 nucleotides
BPHYT_RS01730: BPHYT_RS01730 - serine/threonine protein kinase, at 393,311 to 394,339
_RS01730
BPHYT_RS01735: BPHYT_RS01735 - membrane protein, at 394,367 to 396,268
_RS01735
BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395
_RS01740
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 393.476 kb on + strand, within BPHYT_RS01730 at 393.521 kb on + strand, within BPHYT_RS01730 at 393.640 kb on + strand, within BPHYT_RS01730 at 393.641 kb on - strand, within BPHYT_RS01730 at 394.563 kb on + strand, within BPHYT_RS01735 at 394.564 kb on - strand, within BPHYT_RS01735 at 394.564 kb on - strand, within BPHYT_RS01735 at 394.564 kb on - strand, within BPHYT_RS01735 at 394.622 kb on + strand, within BPHYT_RS01735 at 394.623 kb on - strand, within BPHYT_RS01735 at 394.819 kb on + strand at 394.820 kb on - strand, within BPHYT_RS01735 at 394.820 kb on - strand, within BPHYT_RS01735 at 395.169 kb on + strand, within BPHYT_RS01735 at 395.170 kb on - strand, within BPHYT_RS01735 at 395.170 kb on - strand, within BPHYT_RS01735 at 395.194 kb on + strand, within BPHYT_RS01735 at 395.194 kb on + strand, within BPHYT_RS01735 at 395.194 kb on + strand, within BPHYT_RS01735 at 395.194 kb on + strand, within BPHYT_RS01735 at 395.195 kb on - strand, within BPHYT_RS01735 at 395.195 kb on - strand, within BPHYT_RS01735 at 395.195 kb on - strand, within BPHYT_RS01735 at 395.195 kb on - strand, within BPHYT_RS01735 at 395.308 kb on - strand, within BPHYT_RS01735 at 395.406 kb on + strand, within BPHYT_RS01735 at 395.406 kb on + strand, within BPHYT_RS01735 at 395.407 kb on - strand, within BPHYT_RS01735 at 395.433 kb on + strand, within BPHYT_RS01735 at 395.433 kb on + strand, within BPHYT_RS01735 at 395.608 kb on - strand, within BPHYT_RS01735 at 395.653 kb on - strand, within BPHYT_RS01735 at 395.751 kb on + strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.752 kb on - strand, within BPHYT_RS01735 at 395.767 kb on + strand, within BPHYT_RS01735 at 396.003 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.051 kb on + strand, within BPHYT_RS01735 at 396.052 kb on - strand, within BPHYT_RS01735 at 396.052 kb on - strand, within BPHYT_RS01735 at 396.085 kb on + strand at 396.085 kb on + strand at 396.172 kb on - strand at 396.289 kb on + strand at 396.289 kb on + strand at 396.312 kb on - strand at 396.531 kb on - strand, within BPHYT_RS01740 at 396.567 kb on + strand, within BPHYT_RS01740 at 396.641 kb on + strand, within BPHYT_RS01740 at 396.642 kb on - strand at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.839 kb on + strand, within BPHYT_RS01740 at 397.037 kb on - strand, within BPHYT_RS01740
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 393,476 + BPHYT_RS01730 0.16 +1.2 393,521 + BPHYT_RS01730 0.20 +2.3 393,640 + BPHYT_RS01730 0.32 -1.9 393,641 - BPHYT_RS01730 0.32 +0.6 394,563 + BPHYT_RS01735 0.10 -0.1 394,564 - BPHYT_RS01735 0.10 -0.6 394,564 - BPHYT_RS01735 0.10 -1.4 394,564 - BPHYT_RS01735 0.10 -1.5 394,622 + BPHYT_RS01735 0.13 -3.7 394,623 - BPHYT_RS01735 0.13 -0.9 394,819 + -0.0 394,820 - BPHYT_RS01735 0.24 +0.0 394,820 - BPHYT_RS01735 0.24 -0.5 395,169 + BPHYT_RS01735 0.42 -2.5 395,170 - BPHYT_RS01735 0.42 -0.0 395,170 - BPHYT_RS01735 0.42 -1.2 395,194 + BPHYT_RS01735 0.43 +0.4 395,194 + BPHYT_RS01735 0.43 -0.7 395,194 + BPHYT_RS01735 0.43 -0.9 395,194 + BPHYT_RS01735 0.43 -0.0 395,195 - BPHYT_RS01735 0.44 -2.6 395,195 - BPHYT_RS01735 0.44 +1.4 395,195 - BPHYT_RS01735 0.44 -1.1 395,195 - BPHYT_RS01735 0.44 +0.2 395,308 - BPHYT_RS01735 0.49 -0.4 395,406 + BPHYT_RS01735 0.55 +0.5 395,406 + BPHYT_RS01735 0.55 -2.7 395,407 - BPHYT_RS01735 0.55 -1.6 395,433 + BPHYT_RS01735 0.56 +0.8 395,433 + BPHYT_RS01735 0.56 +1.0 395,608 - BPHYT_RS01735 0.65 -0.7 395,653 - BPHYT_RS01735 0.68 +1.1 395,751 + BPHYT_RS01735 0.73 +1.3 395,752 - BPHYT_RS01735 0.73 -0.7 395,752 - BPHYT_RS01735 0.73 +0.0 395,752 - BPHYT_RS01735 0.73 +1.3 395,767 + BPHYT_RS01735 0.74 +1.6 396,003 + BPHYT_RS01735 0.86 +0.3 396,051 + BPHYT_RS01735 0.89 +0.5 396,051 + BPHYT_RS01735 0.89 -0.1 396,051 + BPHYT_RS01735 0.89 -0.1 396,051 + BPHYT_RS01735 0.89 +0.1 396,052 - BPHYT_RS01735 0.89 +0.6 396,052 - BPHYT_RS01735 0.89 +0.2 396,085 + +2.3 396,085 + -0.4 396,172 - +0.2 396,289 + +1.3 396,289 + -0.4 396,312 - -0.6 396,531 - BPHYT_RS01740 0.15 -1.9 396,567 + BPHYT_RS01740 0.19 +0.0 396,641 + BPHYT_RS01740 0.26 -2.1 396,642 - +0.3 396,766 - BPHYT_RS01740 0.38 -1.5 396,766 - BPHYT_RS01740 0.38 -0.8 396,766 - BPHYT_RS01740 0.38 -0.5 396,806 + BPHYT_RS01740 0.42 -2.3 396,806 + BPHYT_RS01740 0.42 -1.0 396,839 + BPHYT_RS01740 0.46 -1.1 397,037 - BPHYT_RS01740 0.65 -0.5
Or see this region's nucleotide sequence