Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01710 and BPHYT_RS01715 overlap by 4 nucleotides BPHYT_RS01715 and BPHYT_RS01720 are separated by 88 nucleotides
BPHYT_RS01710: BPHYT_RS01710 - RND transporter, at 386,553 to 388,082
_RS01710
BPHYT_RS01715: BPHYT_RS01715 - RND transporter, at 388,079 to 389,284
_RS01715
BPHYT_RS01720: BPHYT_RS01720 - acriflavin resistance protein, at 389,373 to 392,555
_RS01720
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.392 kb on - strand, within BPHYT_RS01710 at 387.424 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.958 kb on + strand at 387.959 kb on - strand at 388.206 kb on - strand, within BPHYT_RS01715 at 388.206 kb on - strand, within BPHYT_RS01715 at 388.415 kb on + strand, within BPHYT_RS01715 at 388.416 kb on - strand, within BPHYT_RS01715 at 388.563 kb on + strand, within BPHYT_RS01715 at 388.689 kb on + strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 389.116 kb on + strand, within BPHYT_RS01715 at 389.167 kb on + strand at 389.329 kb on + strand at 389.330 kb on - strand at 389.330 kb on - strand at 389.330 kb on - strand at 389.863 kb on + strand, within BPHYT_RS01720 at 389.863 kb on + strand, within BPHYT_RS01720 at 389.864 kb on - strand, within BPHYT_RS01720 at 389.864 kb on - strand, within BPHYT_RS01720 at 390.047 kb on + strand, within BPHYT_RS01720 at 390.071 kb on - strand, within BPHYT_RS01720 at 390.211 kb on - strand, within BPHYT_RS01720 at 390.217 kb on + strand, within BPHYT_RS01720
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 387,392 - BPHYT_RS01710 0.55 +1.8 387,424 + BPHYT_RS01710 0.57 -0.1 387,925 + BPHYT_RS01710 0.90 -0.6 387,925 + BPHYT_RS01710 0.90 -0.0 387,925 + BPHYT_RS01710 0.90 -0.2 387,926 - BPHYT_RS01710 0.90 +0.9 387,926 - BPHYT_RS01710 0.90 -0.1 387,926 - BPHYT_RS01710 0.90 +0.1 387,958 + +0.2 387,959 - -2.6 388,206 - BPHYT_RS01715 0.11 -0.2 388,206 - BPHYT_RS01715 0.11 -0.5 388,415 + BPHYT_RS01715 0.28 +0.5 388,416 - BPHYT_RS01715 0.28 +0.3 388,563 + BPHYT_RS01715 0.40 -0.8 388,689 + BPHYT_RS01715 0.51 -0.7 388,690 - BPHYT_RS01715 0.51 -1.7 388,690 - BPHYT_RS01715 0.51 +0.4 389,116 + BPHYT_RS01715 0.86 +0.2 389,167 + +0.4 389,329 + +0.5 389,330 - -1.8 389,330 - +0.9 389,330 - +0.1 389,863 + BPHYT_RS01720 0.15 -0.3 389,863 + BPHYT_RS01720 0.15 +0.3 389,864 - BPHYT_RS01720 0.15 -0.4 389,864 - BPHYT_RS01720 0.15 -1.9 390,047 + BPHYT_RS01720 0.21 -0.1 390,071 - BPHYT_RS01720 0.22 +2.3 390,211 - BPHYT_RS01720 0.26 -1.1 390,217 + BPHYT_RS01720 0.27 +2.3
Or see this region's nucleotide sequence