Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00070 and BPHYT_RS00075 overlap by 4 nucleotides BPHYT_RS00075 and BPHYT_RS00080 overlap by 8 nucleotides BPHYT_RS00080 and BPHYT_RS00085 are separated by 2 nucleotides
BPHYT_RS00070: BPHYT_RS00070 - hypothetical protein, at 19,944 to 21,122
_RS00070
BPHYT_RS00075: BPHYT_RS00075 - hypothetical protein, at 21,119 to 24,493
_RS00075
BPHYT_RS00080: BPHYT_RS00080 - hypothetical protein, at 24,486 to 25,133
_RS00080
BPHYT_RS00085: BPHYT_RS00085 - hypothetical protein, at 25,136 to 26,590
_RS00085
Position (kb) 21
22
23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 20.355 kb on - strand, within BPHYT_RS00070 at 20.475 kb on - strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.478 kb on + strand, within BPHYT_RS00070 at 20.594 kb on - strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.640 kb on + strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.641 kb on - strand, within BPHYT_RS00070 at 20.642 kb on + strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.643 kb on - strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.644 kb on + strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.645 kb on - strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.682 kb on + strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.683 kb on - strand, within BPHYT_RS00070 at 20.876 kb on + strand, within BPHYT_RS00070 at 20.876 kb on + strand, within BPHYT_RS00070 at 21.041 kb on + strand at 21.042 kb on - strand at 21.222 kb on - strand at 21.240 kb on + strand at 21.240 kb on + strand at 21.241 kb on - strand at 21.241 kb on - strand at 21.378 kb on - strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.433 kb on - strand at 21.480 kb on + strand, within BPHYT_RS00075 at 21.758 kb on - strand, within BPHYT_RS00075 at 21.759 kb on + strand, within BPHYT_RS00075 at 21.760 kb on - strand, within BPHYT_RS00075 at 21.774 kb on + strand, within BPHYT_RS00075 at 21.822 kb on - strand, within BPHYT_RS00075 at 21.898 kb on + strand, within BPHYT_RS00075 at 22.195 kb on - strand, within BPHYT_RS00075 at 22.195 kb on - strand, within BPHYT_RS00075 at 22.246 kb on + strand, within BPHYT_RS00075 at 22.247 kb on - strand, within BPHYT_RS00075 at 22.534 kb on + strand, within BPHYT_RS00075 at 22.612 kb on + strand, within BPHYT_RS00075 at 22.613 kb on - strand, within BPHYT_RS00075 at 22.632 kb on + strand, within BPHYT_RS00075 at 22.632 kb on + strand, within BPHYT_RS00075 at 22.800 kb on + strand, within BPHYT_RS00075 at 22.801 kb on - strand, within BPHYT_RS00075 at 22.801 kb on - strand, within BPHYT_RS00075 at 22.897 kb on - strand, within BPHYT_RS00075 at 23.063 kb on + strand, within BPHYT_RS00075 at 23.063 kb on + strand, within BPHYT_RS00075 at 23.063 kb on + strand, within BPHYT_RS00075 at 23.064 kb on - strand, within BPHYT_RS00075 at 23.064 kb on - strand, within BPHYT_RS00075 at 23.064 kb on - strand, within BPHYT_RS00075 at 23.631 kb on - strand, within BPHYT_RS00075 at 23.631 kb on - strand, within BPHYT_RS00075 at 23.841 kb on - strand, within BPHYT_RS00075 at 23.910 kb on + strand, within BPHYT_RS00075 at 24.138 kb on + strand, within BPHYT_RS00075 at 24.138 kb on + strand, within BPHYT_RS00075 at 24.139 kb on - strand, within BPHYT_RS00075 at 24.266 kb on - strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.267 kb on + strand at 24.268 kb on - strand at 24.409 kb on + strand at 24.485 kb on - strand at 24.533 kb on - strand at 24.779 kb on + strand, within BPHYT_RS00080 at 24.779 kb on + strand, within BPHYT_RS00080 at 24.963 kb on + strand, within BPHYT_RS00080 at 24.988 kb on + strand, within BPHYT_RS00080 at 25.051 kb on + strand, within BPHYT_RS00080 at 25.137 kb on + strand at 25.138 kb on - strand at 25.247 kb on - strand at 25.255 kb on + strand at 25.304 kb on + strand, within BPHYT_RS00085 at 25.360 kb on + strand, within BPHYT_RS00085 at 25.448 kb on + strand, within BPHYT_RS00085 at 25.449 kb on - strand, within BPHYT_RS00085 at 25.488 kb on + strand, within BPHYT_RS00085
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 20,355 - BPHYT_RS00070 0.35 -0.0 20,475 - BPHYT_RS00070 0.45 -0.1 20,478 + BPHYT_RS00070 0.45 -0.2 20,478 + BPHYT_RS00070 0.45 -0.5 20,478 + BPHYT_RS00070 0.45 -0.2 20,478 + BPHYT_RS00070 0.45 -2.1 20,594 - BPHYT_RS00070 0.55 -0.7 20,640 + BPHYT_RS00070 0.59 +0.1 20,640 + BPHYT_RS00070 0.59 -0.0 20,640 + BPHYT_RS00070 0.59 +0.6 20,641 - BPHYT_RS00070 0.59 +1.0 20,641 - BPHYT_RS00070 0.59 +0.4 20,642 + BPHYT_RS00070 0.59 -1.1 20,643 - BPHYT_RS00070 0.59 -1.0 20,643 - BPHYT_RS00070 0.59 +0.7 20,644 + BPHYT_RS00070 0.59 -0.5 20,644 + BPHYT_RS00070 0.59 -1.3 20,645 - BPHYT_RS00070 0.59 +0.0 20,645 - BPHYT_RS00070 0.59 -0.5 20,682 + BPHYT_RS00070 0.63 +0.7 20,682 + BPHYT_RS00070 0.63 -0.6 20,683 - BPHYT_RS00070 0.63 -0.6 20,683 - BPHYT_RS00070 0.63 +0.4 20,683 - BPHYT_RS00070 0.63 +0.9 20,683 - BPHYT_RS00070 0.63 +0.3 20,683 - BPHYT_RS00070 0.63 -1.5 20,683 - BPHYT_RS00070 0.63 +0.1 20,683 - BPHYT_RS00070 0.63 -0.4 20,876 + BPHYT_RS00070 0.79 -0.1 20,876 + BPHYT_RS00070 0.79 +0.5 21,041 + +0.6 21,042 - +0.4 21,222 - +0.4 21,240 + -0.0 21,240 + -0.5 21,241 - +0.3 21,241 - -0.9 21,378 - -1.2 21,430 + -0.2 21,430 + +0.2 21,430 + +1.3 21,431 - -2.9 21,431 - -0.6 21,431 - -0.3 21,433 - -1.4 21,480 + BPHYT_RS00075 0.11 +2.0 21,758 - BPHYT_RS00075 0.19 -0.7 21,759 + BPHYT_RS00075 0.19 -1.1 21,760 - BPHYT_RS00075 0.19 +0.6 21,774 + BPHYT_RS00075 0.19 +2.4 21,822 - BPHYT_RS00075 0.21 +0.3 21,898 + BPHYT_RS00075 0.23 -2.2 22,195 - BPHYT_RS00075 0.32 -1.2 22,195 - BPHYT_RS00075 0.32 -0.7 22,246 + BPHYT_RS00075 0.33 -1.1 22,247 - BPHYT_RS00075 0.33 +1.0 22,534 + BPHYT_RS00075 0.42 -1.8 22,612 + BPHYT_RS00075 0.44 -0.3 22,613 - BPHYT_RS00075 0.44 +0.6 22,632 + BPHYT_RS00075 0.45 +0.2 22,632 + BPHYT_RS00075 0.45 -1.5 22,800 + BPHYT_RS00075 0.50 -0.4 22,801 - BPHYT_RS00075 0.50 -0.6 22,801 - BPHYT_RS00075 0.50 -0.4 22,897 - BPHYT_RS00075 0.53 -1.1 23,063 + BPHYT_RS00075 0.58 -0.2 23,063 + BPHYT_RS00075 0.58 +0.8 23,063 + BPHYT_RS00075 0.58 +0.5 23,064 - BPHYT_RS00075 0.58 +0.4 23,064 - BPHYT_RS00075 0.58 -0.2 23,064 - BPHYT_RS00075 0.58 -1.1 23,631 - BPHYT_RS00075 0.74 -0.2 23,631 - BPHYT_RS00075 0.74 +0.2 23,841 - BPHYT_RS00075 0.81 +0.3 23,910 + BPHYT_RS00075 0.83 +1.1 24,138 + BPHYT_RS00075 0.89 -1.8 24,138 + BPHYT_RS00075 0.89 +0.3 24,139 - BPHYT_RS00075 0.89 -0.1 24,266 - -1.1 24,267 + -0.5 24,267 + +0.5 24,267 + +0.7 24,267 + +0.6 24,267 + -0.7 24,268 - +0.3 24,409 + -0.4 24,485 - +1.7 24,533 - +1.1 24,779 + BPHYT_RS00080 0.45 -0.9 24,779 + BPHYT_RS00080 0.45 +0.4 24,963 + BPHYT_RS00080 0.74 -0.8 24,988 + BPHYT_RS00080 0.77 -1.1 25,051 + BPHYT_RS00080 0.87 -2.4 25,137 + +0.0 25,138 - +1.4 25,247 - -2.0 25,255 + -1.2 25,304 + BPHYT_RS00085 0.12 -0.9 25,360 + BPHYT_RS00085 0.15 -1.5 25,448 + BPHYT_RS00085 0.21 -0.4 25,449 - BPHYT_RS00085 0.22 -1.6 25,488 + BPHYT_RS00085 0.24 -0.4
Or see this region's nucleotide sequence