Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29870

Experiment: 36hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29865 and BPHYT_RS29870 are separated by 480 nucleotidesBPHYT_RS29870 and BPHYT_RS29875 are separated by 105 nucleotides BPHYT_RS29865: BPHYT_RS29865 - sugar transferase, at 2,252,181 to 2,253,560 _RS29865 BPHYT_RS29870: BPHYT_RS29870 - 2-dehydropantoate 2-reductase, at 2,254,041 to 2,255,018 _RS29870 BPHYT_RS29875: BPHYT_RS29875 - betaine-aldehyde dehydrogenase, at 2,255,124 to 2,256,575 _RS29875 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -1 0 1at 2253.387 kb on + strand, within BPHYT_RS29865at 2254.629 kb on - strand, within BPHYT_RS29870

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 0.1
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2,253,387 + BPHYT_RS29865 0.87 +0.2
2,254,629 - BPHYT_RS29870 0.60 -0.9

Or see this region's nucleotide sequence