Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21685

Experiment: 36hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21680 and BPHYT_RS21685 are separated by 173 nucleotidesBPHYT_RS21685 and BPHYT_RS21690 overlap by 1 nucleotides BPHYT_RS21680: BPHYT_RS21680 - amino acid permease-associated protein, at 418,298 to 419,728 _RS21680 BPHYT_RS21685: BPHYT_RS21685 - cobalamin biosynthesis protein CobS, at 419,902 to 420,858 _RS21685 BPHYT_RS21690: BPHYT_RS21690 - cobalt chelatase, at 420,858 to 422,591 _RS21690 Position (kb) 419 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1at 419.132 kb on + strand, within BPHYT_RS21680at 419.232 kb on - strand, within BPHYT_RS21680at 419.373 kb on - strand, within BPHYT_RS21680at 419.439 kb on - strand, within BPHYT_RS21680at 419.532 kb on - strand, within BPHYT_RS21680at 419.827 kb on + strandat 419.828 kb on - strandat 420.159 kb on + strand, within BPHYT_RS21685at 420.237 kb on + strand, within BPHYT_RS21685at 420.515 kb on - strand, within BPHYT_RS21685at 421.076 kb on - strand, within BPHYT_RS21690at 421.303 kb on - strand, within BPHYT_RS21690

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 0.1
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419,132 + BPHYT_RS21680 0.58 +0.1
419,232 - BPHYT_RS21680 0.65 -0.1
419,373 - BPHYT_RS21680 0.75 +0.4
419,439 - BPHYT_RS21680 0.80 +0.8
419,532 - BPHYT_RS21680 0.86 +0.1
419,827 + +0.5
419,828 - +1.4
420,159 + BPHYT_RS21685 0.27 -0.5
420,237 + BPHYT_RS21685 0.35 -0.8
420,515 - BPHYT_RS21685 0.64 -2.9
421,076 - BPHYT_RS21690 0.13 -0.3
421,303 - BPHYT_RS21690 0.26 -0.2

Or see this region's nucleotide sequence