Experiment: 36hr PHYTO2 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19330 and BPHYT_RS19335 are separated by 139 nucleotides BPHYT_RS19335 and BPHYT_RS19340 are separated by 30 nucleotides
BPHYT_RS19330: BPHYT_RS19330 - glycine cleavage system P protein (EC 1.4.4.2) <small>(from data)</small>, at 4,339,951 to 4,342,887
_RS19330
BPHYT_RS19335: BPHYT_RS19335 - hypothetical protein, at 4,343,027 to 4,344,157
_RS19335
BPHYT_RS19340: BPHYT_RS19340 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 4,344,188 to 4,345,576
_RS19340
Position (kb) 4343
4344
4345 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.040 kb on - strand, within BPHYT_RS19330 at 4342.229 kb on - strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.310 kb on - strand, within BPHYT_RS19330 at 4342.414 kb on + strand, within BPHYT_RS19330 at 4342.522 kb on + strand, within BPHYT_RS19330 at 4342.523 kb on - strand, within BPHYT_RS19330 at 4342.801 kb on + strand at 4342.879 kb on + strand at 4342.879 kb on + strand at 4343.444 kb on + strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.796 kb on - strand, within BPHYT_RS19335 at 4344.083 kb on - strand at 4344.167 kb on - strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.185 kb on + strand at 4344.186 kb on - strand at 4344.338 kb on + strand, within BPHYT_RS19340 at 4344.339 kb on - strand, within BPHYT_RS19340 at 4344.617 kb on + strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.618 kb on - strand, within BPHYT_RS19340 at 4344.664 kb on + strand, within BPHYT_RS19340 at 4344.891 kb on + strand, within BPHYT_RS19340 at 4345.011 kb on - strand, within BPHYT_RS19340 at 4345.106 kb on + strand, within BPHYT_RS19340 at 4345.107 kb on - strand, within BPHYT_RS19340 at 4345.107 kb on - strand, within BPHYT_RS19340 at 4345.109 kb on + strand, within BPHYT_RS19340 at 4345.109 kb on + strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340 at 4345.110 kb on - strand, within BPHYT_RS19340
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 0.1 remove 4,342,039 + BPHYT_RS19330 0.71 -1.1 4,342,039 + BPHYT_RS19330 0.71 +0.1 4,342,039 + BPHYT_RS19330 0.71 -1.2 4,342,040 - BPHYT_RS19330 0.71 +1.5 4,342,229 - BPHYT_RS19330 0.78 -0.7 4,342,309 + BPHYT_RS19330 0.80 +1.4 4,342,309 + BPHYT_RS19330 0.80 +1.6 4,342,309 + BPHYT_RS19330 0.80 +3.9 4,342,310 - BPHYT_RS19330 0.80 +0.3 4,342,414 + BPHYT_RS19330 0.84 -0.5 4,342,522 + BPHYT_RS19330 0.88 +0.0 4,342,523 - BPHYT_RS19330 0.88 +0.2 4,342,801 + +0.9 4,342,879 + -0.2 4,342,879 + +0.2 4,343,444 + BPHYT_RS19335 0.37 -0.7 4,343,445 - BPHYT_RS19335 0.37 +0.8 4,343,445 - BPHYT_RS19335 0.37 -0.5 4,343,795 + BPHYT_RS19335 0.68 -0.2 4,343,795 + BPHYT_RS19335 0.68 +0.3 4,343,796 - BPHYT_RS19335 0.68 +0.8 4,344,083 - -1.6 4,344,167 - -1.1 4,344,185 + -1.0 4,344,185 + -0.1 4,344,185 + -0.2 4,344,185 + -1.5 4,344,186 - -1.1 4,344,338 + BPHYT_RS19340 0.11 +0.2 4,344,339 - BPHYT_RS19340 0.11 -1.4 4,344,617 + BPHYT_RS19340 0.31 -1.6 4,344,618 - BPHYT_RS19340 0.31 +0.3 4,344,618 - BPHYT_RS19340 0.31 +1.0 4,344,618 - BPHYT_RS19340 0.31 +0.3 4,344,664 + BPHYT_RS19340 0.34 -1.6 4,344,891 + BPHYT_RS19340 0.51 +1.0 4,345,011 - BPHYT_RS19340 0.59 +0.6 4,345,106 + BPHYT_RS19340 0.66 -0.3 4,345,107 - BPHYT_RS19340 0.66 -0.5 4,345,107 - BPHYT_RS19340 0.66 -0.7 4,345,109 + BPHYT_RS19340 0.66 +1.0 4,345,109 + BPHYT_RS19340 0.66 -1.3 4,345,110 - BPHYT_RS19340 0.66 +1.3 4,345,110 - BPHYT_RS19340 0.66 -0.9 4,345,110 - BPHYT_RS19340 0.66 +0.2
Or see this region's nucleotide sequence