Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11130

Experiment: 36hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11120 and BPHYT_RS11125 are separated by 239 nucleotidesBPHYT_RS11125 and BPHYT_RS11130 are separated by 36 nucleotidesBPHYT_RS11130 and BPHYT_RS11135 are separated by 325 nucleotides BPHYT_RS11120: BPHYT_RS11120 - ferredoxin--NADP reductase, at 2,526,932 to 2,527,981 _RS11120 BPHYT_RS11125: BPHYT_RS11125 - alkylhydroperoxidase, at 2,528,221 to 2,528,658 _RS11125 BPHYT_RS11130: BPHYT_RS11130 - chemotaxis protein, at 2,528,695 to 2,530,269 _RS11130 BPHYT_RS11135: BPHYT_RS11135 - LysR family transcriptional regulator, at 2,530,595 to 2,531,455 _RS11135 Position (kb) 2528 2529 2530 2531Strain fitness (log2 ratio) -1 0 1at 2528.002 kb on + strandat 2528.003 kb on - strandat 2528.003 kb on - strandat 2528.243 kb on - strandat 2528.369 kb on - strand, within BPHYT_RS11125at 2528.823 kb on + strandat 2528.920 kb on - strand, within BPHYT_RS11130at 2529.985 kb on - strand, within BPHYT_RS11130at 2530.311 kb on - strandat 2530.311 kb on - strandat 2530.354 kb on + strandat 2530.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 0.1
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2,528,002 + +1.3
2,528,003 - -0.0
2,528,003 - -0.3
2,528,243 - -0.9
2,528,369 - BPHYT_RS11125 0.34 -1.0
2,528,823 + +0.0
2,528,920 - BPHYT_RS11130 0.14 -0.1
2,529,985 - BPHYT_RS11130 0.82 +0.4
2,530,311 - -0.8
2,530,311 - -0.8
2,530,354 + -1.3
2,530,549 + +0.4

Or see this region's nucleotide sequence