Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35560 and BPHYT_RS35565 are separated by 54 nucleotides BPHYT_RS35565 and BPHYT_RS35570 are separated by 410 nucleotides BPHYT_RS35570 and BPHYT_RS35575 are separated by 177 nucleotides BPHYT_RS35575 and BPHYT_RS35580 are separated by 105 nucleotides
BPHYT_RS35560: BPHYT_RS35560 - endoribonuclease L-PSP, at 3,574,491 to 3,574,976
_RS35560
BPHYT_RS35565: BPHYT_RS35565 - activator of HSP90 ATPase, at 3,575,031 to 3,575,477
_RS35565
BPHYT_RS35570: BPHYT_RS35570 - hypothetical protein, at 3,575,888 to 3,576,139
_RS35570
BPHYT_RS35575: BPHYT_RS35575 - transcriptional regulator, at 3,576,317 to 3,576,775
_RS35575
BPHYT_RS35580: BPHYT_RS35580 - hypothetical protein, at 3,576,881 to 3,577,303
_RS35580
Position (kb)
3575
3576
3577 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3575.032 kb on + strand at 3575.095 kb on + strand, within BPHYT_RS35565 at 3575.096 kb on - strand, within BPHYT_RS35565 at 3575.264 kb on - strand, within BPHYT_RS35565 at 3575.336 kb on + strand, within BPHYT_RS35565 at 3575.391 kb on + strand, within BPHYT_RS35565 at 3575.512 kb on - strand at 3575.612 kb on + strand at 3575.635 kb on - strand at 3575.766 kb on + strand at 3576.075 kb on - strand, within BPHYT_RS35570 at 3576.081 kb on + strand, within BPHYT_RS35570 at 3576.231 kb on + strand at 3576.571 kb on - strand, within BPHYT_RS35575 at 3576.654 kb on + strand, within BPHYT_RS35575 at 3576.655 kb on - strand, within BPHYT_RS35575 at 3576.655 kb on - strand, within BPHYT_RS35575 at 3576.764 kb on + strand at 3576.797 kb on + strand at 3576.819 kb on + strand at 3576.819 kb on + strand at 3576.822 kb on - strand at 3576.822 kb on - strand at 3576.882 kb on + strand at 3576.883 kb on - strand at 3576.883 kb on - strand at 3576.921 kb on + strand at 3577.078 kb on + strand, within BPHYT_RS35580 at 3577.078 kb on + strand, within BPHYT_RS35580 at 3577.119 kb on + strand, within BPHYT_RS35580
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 3,575,032 + -0.4 3,575,095 + BPHYT_RS35565 0.14 -1.6 3,575,096 - BPHYT_RS35565 0.15 -1.9 3,575,264 - BPHYT_RS35565 0.52 -0.1 3,575,336 + BPHYT_RS35565 0.68 -0.2 3,575,391 + BPHYT_RS35565 0.81 -0.8 3,575,512 - -0.4 3,575,612 + -0.7 3,575,635 - -0.6 3,575,766 + +0.6 3,576,075 - BPHYT_RS35570 0.74 +0.7 3,576,081 + BPHYT_RS35570 0.77 -0.8 3,576,231 + +2.0 3,576,571 - BPHYT_RS35575 0.55 +0.6 3,576,654 + BPHYT_RS35575 0.73 -0.7 3,576,655 - BPHYT_RS35575 0.74 +1.6 3,576,655 - BPHYT_RS35575 0.74 -0.8 3,576,764 + -0.7 3,576,797 + -1.0 3,576,819 + +0.2 3,576,819 + -0.2 3,576,822 - +0.1 3,576,822 - -1.5 3,576,882 + -0.3 3,576,883 - -0.4 3,576,883 - -0.6 3,576,921 + -1.2 3,577,078 + BPHYT_RS35580 0.47 -0.9 3,577,078 + BPHYT_RS35580 0.47 -0.1 3,577,119 + BPHYT_RS35580 0.56 -1.5
Or see this region's nucleotide sequence