Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32270
Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,808,906 | - | BPHYT_RS32265 | 0.71 | -1.6 | |
2,809,117 | + | BPHYT_RS32265 | 0.84 | +0.7 | |
2,809,382 | + | +0.6 | |||
2,809,383 | - | -1.2 | |||
2,809,425 | - | -1.4 | |||
2,809,986 | - | BPHYT_RS32270 | 0.56 | -1.5 | |
2,810,225 | + | -0.6 | |||
2,810,481 | - | +0.2 | |||
2,810,895 | + | +1.0 | |||
2,810,991 | + | -0.6 | |||
2,811,099 | + | +1.5 |
Or see this region's nucleotide sequence