Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29600

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,195,973	+		BPHYT_RS29595	0.62	-0.1
2,195,973	+		BPHYT_RS29595	0.62	-0.3
2,195,974	-		BPHYT_RS29595	0.62	-1.0
2,195,986	+		BPHYT_RS29595	0.63	-0.4
2,195,986	+		BPHYT_RS29595	0.63	-0.6
2,195,986	+		BPHYT_RS29595	0.63	+0.6
2,195,987	-		BPHYT_RS29595	0.63	-0.0
2,196,714	-				-1.7
2,196,834	+		BPHYT_RS29600	0.21	+0.6
2,196,834	+		BPHYT_RS29600	0.21	-0.2
2,196,911	+		BPHYT_RS29600	0.29	+0.2
2,196,911	+		BPHYT_RS29600	0.29	-0.7
2,196,912	-		BPHYT_RS29600	0.29	-0.9
2,196,912	-		BPHYT_RS29600	0.29	-0.1
2,197,116	+		BPHYT_RS29600	0.49	-0.8
2,197,119	-		BPHYT_RS29600	0.49	-0.0
2,197,187	+		BPHYT_RS29600	0.56	-1.7
2,197,187	+		BPHYT_RS29600	0.56	-0.0
2,197,188	-		BPHYT_RS29600	0.56	-0.7
2,197,188	-		BPHYT_RS29600	0.56	-0.6
2,197,346	-		BPHYT_RS29600	0.72	-1.1
2,197,371	-		BPHYT_RS29600	0.74	-1.2
2,197,371	-		BPHYT_RS29600	0.74	-1.1
2,197,371	-		BPHYT_RS29600	0.74	-0.9
2,197,375	-		BPHYT_RS29600	0.75	-0.1
2,197,376	+		BPHYT_RS29600	0.75	-1.7
2,197,376	+		BPHYT_RS29600	0.75	+1.9
2,197,377	-		BPHYT_RS29600	0.75	+1.2
2,197,377	-		BPHYT_RS29600	0.75	-0.7
2,197,403	+		BPHYT_RS29600	0.77	-0.2
2,197,403	+		BPHYT_RS29600	0.77	+0.8
2,197,404	-		BPHYT_RS29600	0.78	-1.3
2,197,662	+				-0.0
2,197,662	+				-0.4
2,197,663	-				-0.5
2,197,725	-				+1.5
2,197,735	+				-1.4
2,197,737	+				+0.6
2,198,141	+		BPHYT_RS29605	0.46	+0.8
2,198,142	-		BPHYT_RS29605	0.46	+0.3
2,198,488	+				-0.7
2,198,489	-				+0.4
2,198,502	-				-1.1
2,198,613	+				-1.3