Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26035

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26025 and BPHYT_RS26030 overlap by 10 nucleotidesBPHYT_RS26030 and BPHYT_RS26035 overlap by 4 nucleotidesBPHYT_RS26035 and BPHYT_RS26040 are separated by 2 nucleotidesBPHYT_RS26040 and BPHYT_RS26045 are separated by 61 nucleotides BPHYT_RS26025: BPHYT_RS26025 - hypothetical protein, at 1,414,729 to 1,415,124 _RS26025 BPHYT_RS26030: BPHYT_RS26030 - cysteine hydrolase, at 1,415,115 to 1,415,810 _RS26030 BPHYT_RS26035: BPHYT_RS26035 - ABC transporter ATP-binding protein, at 1,415,807 to 1,417,417 _RS26035 BPHYT_RS26040: BPHYT_RS26040 - cysteine hydrolase, at 1,417,420 to 1,418,112 _RS26040 BPHYT_RS26045: BPHYT_RS26045 - ABC transporter permease, at 1,418,174 to 1,419,091 _RS26045 Position (kb) 1415 1416 1417 1418Strain fitness (log2 ratio) -2 -1 0 1 2at 1415.070 kb on - strand, within BPHYT_RS26025at 1415.236 kb on + strand, within BPHYT_RS26030at 1415.588 kb on + strand, within BPHYT_RS26030at 1415.588 kb on + strand, within BPHYT_RS26030at 1416.918 kb on - strand, within BPHYT_RS26035at 1416.939 kb on + strand, within BPHYT_RS26035at 1416.940 kb on - strand, within BPHYT_RS26035at 1417.417 kb on + strandat 1417.418 kb on - strandat 1417.489 kb on - strandat 1417.995 kb on - strand, within BPHYT_RS26040at 1418.118 kb on - strandat 1418.278 kb on - strand, within BPHYT_RS26045at 1418.278 kb on - strand, within BPHYT_RS26045at 1418.284 kb on - strand, within BPHYT_RS26045

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,415,070 - BPHYT_RS26025 0.86 +1.0
1,415,236 + BPHYT_RS26030 0.17 +2.5
1,415,588 + BPHYT_RS26030 0.68 -2.1
1,415,588 + BPHYT_RS26030 0.68 +0.5
1,416,918 - BPHYT_RS26035 0.69 -1.4
1,416,939 + BPHYT_RS26035 0.70 -1.1
1,416,940 - BPHYT_RS26035 0.70 +0.5
1,417,417 + +0.9
1,417,418 - +0.5
1,417,489 - -0.7
1,417,995 - BPHYT_RS26040 0.83 +0.9
1,418,118 - +0.4
1,418,278 - BPHYT_RS26045 0.11 +0.2
1,418,278 - BPHYT_RS26045 0.11 +0.3
1,418,284 - BPHYT_RS26045 0.12 +0.0

Or see this region's nucleotide sequence