Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25370

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25365 and BPHYT_RS25370 are separated by 26 nucleotidesBPHYT_RS25370 and BPHYT_RS25375 are separated by 350 nucleotides BPHYT_RS25365: BPHYT_RS25365 - thiolase, at 1,268,009 to 1,269,250 _RS25365 BPHYT_RS25370: BPHYT_RS25370 - acyl-CoA dehydrogenase, at 1,269,277 to 1,270,419 _RS25370 BPHYT_RS25375: BPHYT_RS25375 - lipid-transfer protein, at 1,270,770 to 1,271,951 _RS25375 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -2 -1 0 1at 1269.270 kb on - strandat 1269.274 kb on - strandat 1269.612 kb on + strand, within BPHYT_RS25370at 1269.613 kb on - strand, within BPHYT_RS25370at 1270.549 kb on - strandat 1271.127 kb on + strand, within BPHYT_RS25375at 1271.166 kb on - strand, within BPHYT_RS25375at 1271.166 kb on - strand, within BPHYT_RS25375at 1271.342 kb on - strand, within BPHYT_RS25375

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,269,270 - -1.4
1,269,274 - +1.5
1,269,612 + BPHYT_RS25370 0.29 -0.5
1,269,613 - BPHYT_RS25370 0.29 -1.0
1,270,549 - -1.9
1,271,127 + BPHYT_RS25375 0.30 +0.1
1,271,166 - BPHYT_RS25375 0.34 +0.4
1,271,166 - BPHYT_RS25375 0.34 -0.2
1,271,342 - BPHYT_RS25375 0.48 +0.2

Or see this region's nucleotide sequence