Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23995

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23990 and BPHYT_RS23995 are separated by 12 nucleotidesBPHYT_RS23995 and BPHYT_RS24000 are separated by 293 nucleotides BPHYT_RS23990: BPHYT_RS23990 - N-hydroxyarylamine O-acetyltransferase, at 948,653 to 949,492 _RS23990 BPHYT_RS23995: BPHYT_RS23995 - isoprenylcysteine carboxyl methyltransferase, at 949,505 to 950,185 _RS23995 BPHYT_RS24000: BPHYT_RS24000 - L-histidine ABC transporter, substrate-binding component (from data), at 950,479 to 951,339 _RS24000 Position (kb) 949 950 951Strain fitness (log2 ratio) -1 0 1 2at 948.676 kb on + strandat 949.185 kb on - strand, within BPHYT_RS23990at 949.901 kb on + strand, within BPHYT_RS23995at 949.901 kb on + strand, within BPHYT_RS23995at 949.943 kb on - strand, within BPHYT_RS23995at 949.989 kb on - strand, within BPHYT_RS23995at 950.078 kb on - strand, within BPHYT_RS23995at 950.141 kb on + strandat 950.728 kb on - strand, within BPHYT_RS24000at 951.121 kb on + strand, within BPHYT_RS24000at 951.125 kb on - strand, within BPHYT_RS24000

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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948,676 + +0.2
949,185 - BPHYT_RS23990 0.63 -0.6
949,901 + BPHYT_RS23995 0.58 +0.0
949,901 + BPHYT_RS23995 0.58 +0.5
949,943 - BPHYT_RS23995 0.64 -0.5
949,989 - BPHYT_RS23995 0.71 +0.2
950,078 - BPHYT_RS23995 0.84 +0.7
950,141 + +2.5
950,728 - BPHYT_RS24000 0.29 +0.2
951,121 + BPHYT_RS24000 0.75 +0.4
951,125 - BPHYT_RS24000 0.75 -1.5

Or see this region's nucleotide sequence