Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23740 and BPHYT_RS23745 are separated by 277 nucleotides BPHYT_RS23745 and BPHYT_RS23750 are separated by 202 nucleotides BPHYT_RS23750 and BPHYT_RS23755 are separated by 125 nucleotides
BPHYT_RS23740: BPHYT_RS23740 - AraC family transcriptional regulator, at 894,037 to 894,792
_RS23740
BPHYT_RS23745: BPHYT_RS23745 - hypothetical protein, at 895,070 to 895,306
_RS23745
BPHYT_RS23750: BPHYT_RS23750 - phosphonate ABC transporter substrate-binding protein, at 895,509 to 896,597
_RS23750
BPHYT_RS23755: BPHYT_RS23755 - phosphonate ABC transporter ATP-binding protein, at 896,723 to 897,823
_RS23755
Position (kb) 895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.583 kb on + strand, within BPHYT_RS23740 at 894.835 kb on - strand at 894.939 kb on - strand at 894.981 kb on + strand at 895.040 kb on - strand at 895.040 kb on - strand at 895.040 kb on - strand at 895.061 kb on - strand at 895.305 kb on - strand at 895.635 kb on + strand, within BPHYT_RS23750 at 895.635 kb on + strand, within BPHYT_RS23750 at 895.662 kb on + strand, within BPHYT_RS23750 at 895.843 kb on - strand, within BPHYT_RS23750 at 895.857 kb on + strand, within BPHYT_RS23750 at 895.858 kb on - strand, within BPHYT_RS23750 at 895.920 kb on + strand, within BPHYT_RS23750 at 895.921 kb on - strand, within BPHYT_RS23750 at 896.148 kb on + strand, within BPHYT_RS23750 at 896.595 kb on + strand at 896.699 kb on + strand at 896.699 kb on + strand at 897.056 kb on + strand, within BPHYT_RS23755 at 897.056 kb on + strand, within BPHYT_RS23755 at 897.056 kb on + strand, within BPHYT_RS23755 at 897.057 kb on - strand, within BPHYT_RS23755 at 897.309 kb on + strand, within BPHYT_RS23755 at 897.309 kb on + strand, within BPHYT_RS23755 at 897.310 kb on - strand, within BPHYT_RS23755 at 897.310 kb on - strand, within BPHYT_RS23755 at 897.474 kb on - strand, within BPHYT_RS23755 at 897.566 kb on + strand, within BPHYT_RS23755
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 894,583 + BPHYT_RS23740 0.72 -1.5 894,835 - +0.6 894,939 - +1.1 894,981 + -0.9 895,040 - +0.4 895,040 - -3.2 895,040 - -0.2 895,061 - -1.6 895,305 - -0.9 895,635 + BPHYT_RS23750 0.12 -2.0 895,635 + BPHYT_RS23750 0.12 +0.5 895,662 + BPHYT_RS23750 0.14 +0.5 895,843 - BPHYT_RS23750 0.31 -2.0 895,857 + BPHYT_RS23750 0.32 -0.2 895,858 - BPHYT_RS23750 0.32 -2.5 895,920 + BPHYT_RS23750 0.38 +0.2 895,921 - BPHYT_RS23750 0.38 +2.5 896,148 + BPHYT_RS23750 0.59 -1.2 896,595 + -0.2 896,699 + -0.2 896,699 + -0.9 897,056 + BPHYT_RS23755 0.30 -0.1 897,056 + BPHYT_RS23755 0.30 +0.1 897,056 + BPHYT_RS23755 0.30 +1.4 897,057 - BPHYT_RS23755 0.30 +0.2 897,309 + BPHYT_RS23755 0.53 +0.0 897,309 + BPHYT_RS23755 0.53 +0.8 897,310 - BPHYT_RS23755 0.53 -0.1 897,310 - BPHYT_RS23755 0.53 +0.4 897,474 - BPHYT_RS23755 0.68 +0.2 897,566 + BPHYT_RS23755 0.77 -0.4
Or see this region's nucleotide sequence