Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23725 and BPHYT_RS23730 are separated by 261 nucleotides BPHYT_RS23730 and BPHYT_RS23735 are separated by 133 nucleotides
BPHYT_RS23725: BPHYT_RS23725 - hypothetical protein, at 890,038 to 891,024
_RS23725
BPHYT_RS23730: BPHYT_RS23730 - multidrug DMT transporter permease, at 891,286 to 892,158
_RS23730
BPHYT_RS23735: BPHYT_RS23735 - ABC transporter, at 892,292 to 893,851
_RS23735
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1 at 890.342 kb on - strand, within BPHYT_RS23725 at 890.402 kb on - strand, within BPHYT_RS23725 at 890.449 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.818 kb on + strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.863 kb on - strand, within BPHYT_RS23725 at 891.371 kb on + strand at 891.372 kb on - strand at 891.932 kb on + strand, within BPHYT_RS23730 at 891.932 kb on + strand, within BPHYT_RS23730 at 891.959 kb on - strand, within BPHYT_RS23730 at 892.421 kb on - strand at 892.483 kb on + strand, within BPHYT_RS23735 at 892.484 kb on - strand, within BPHYT_RS23735 at 892.484 kb on - strand, within BPHYT_RS23735 at 892.565 kb on + strand, within BPHYT_RS23735 at 892.579 kb on + strand, within BPHYT_RS23735 at 892.579 kb on + strand, within BPHYT_RS23735 at 892.579 kb on + strand, within BPHYT_RS23735 at 892.580 kb on - strand, within BPHYT_RS23735 at 892.588 kb on + strand, within BPHYT_RS23735 at 892.589 kb on - strand, within BPHYT_RS23735 at 892.851 kb on + strand, within BPHYT_RS23735 at 893.146 kb on - strand, within BPHYT_RS23735
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 890,342 - BPHYT_RS23725 0.31 -0.8 890,402 - BPHYT_RS23725 0.37 -0.8 890,449 + BPHYT_RS23725 0.42 +0.2 890,524 + BPHYT_RS23725 0.49 +0.8 890,524 + BPHYT_RS23725 0.49 -1.2 890,818 + BPHYT_RS23725 0.79 +1.3 890,840 - BPHYT_RS23725 0.81 -0.4 890,840 - BPHYT_RS23725 0.81 +0.2 890,863 - BPHYT_RS23725 0.84 -0.8 891,371 + +0.7 891,372 - +0.7 891,932 + BPHYT_RS23730 0.74 +0.8 891,932 + BPHYT_RS23730 0.74 -0.2 891,959 - BPHYT_RS23730 0.77 +0.3 892,421 - -0.1 892,483 + BPHYT_RS23735 0.12 +0.6 892,484 - BPHYT_RS23735 0.12 +0.1 892,484 - BPHYT_RS23735 0.12 -0.4 892,565 + BPHYT_RS23735 0.17 +0.0 892,579 + BPHYT_RS23735 0.18 -0.7 892,579 + BPHYT_RS23735 0.18 -0.8 892,579 + BPHYT_RS23735 0.18 +0.7 892,580 - BPHYT_RS23735 0.18 +1.2 892,588 + BPHYT_RS23735 0.19 -0.3 892,589 - BPHYT_RS23735 0.19 -0.9 892,851 + BPHYT_RS23735 0.36 +0.1 893,146 - BPHYT_RS23735 0.55 +0.0
Or see this region's nucleotide sequence