Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23555 and BPHYT_RS23560 are separated by 424 nucleotides BPHYT_RS23560 and BPHYT_RS23565 are separated by 33 nucleotides BPHYT_RS23565 and BPHYT_RS23570 are separated by 351 nucleotides
BPHYT_RS23555: BPHYT_RS23555 - multidrug transporter, at 855,696 to 856,925
_RS23555
BPHYT_RS23560: BPHYT_RS23560 - hypothetical protein, at 857,350 to 857,571
_RS23560
BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398
_RS23565
BPHYT_RS23570: BPHYT_RS23570 - chemotaxis protein CheY, at 859,750 to 860,916
_RS23570
Position (kb) 857
858
859
860 Strain fitness (log2 ratio) -1
0
1 at 856.926 kb on - strand at 857.005 kb on + strand at 857.005 kb on + strand at 857.072 kb on + strand at 857.233 kb on + strand at 857.308 kb on + strand at 857.671 kb on - strand at 857.728 kb on - strand at 858.160 kb on - strand, within BPHYT_RS23565 at 858.201 kb on - strand, within BPHYT_RS23565 at 858.449 kb on + strand, within BPHYT_RS23565 at 858.820 kb on - strand at 859.061 kb on + strand, within BPHYT_RS23565 at 859.638 kb on - strand at 859.639 kb on + strand at 859.890 kb on - strand, within BPHYT_RS23570 at 860.273 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 856,926 - +0.7 857,005 + +0.5 857,005 + -0.9 857,072 + -1.2 857,233 + +0.5 857,308 + +0.1 857,671 - -0.7 857,728 - -1.3 858,160 - BPHYT_RS23565 0.31 +0.9 858,201 - BPHYT_RS23565 0.33 +0.2 858,449 + BPHYT_RS23565 0.47 -0.0 858,820 - -0.1 859,061 + BPHYT_RS23565 0.81 +0.8 859,638 - -0.5 859,639 + -1.0 859,890 - BPHYT_RS23570 0.12 -1.6 860,273 - BPHYT_RS23570 0.45 +0.5 860,336 - BPHYT_RS23570 0.50 -0.4 860,336 - BPHYT_RS23570 0.50 +1.0
Or see this region's nucleotide sequence