Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23080

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23075 and BPHYT_RS23080 are separated by 225 nucleotidesBPHYT_RS23080 and BPHYT_RS23085 are separated by 48 nucleotides BPHYT_RS23075: BPHYT_RS23075 - GntR family transcriptional regulator, at 740,374 to 741,030 _RS23075 BPHYT_RS23080: BPHYT_RS23080 - gamma-glutamyltransferase, at 741,256 to 743,040 _RS23080 BPHYT_RS23085: BPHYT_RS23085 - MFS transporter, at 743,089 to 744,501 _RS23085 Position (kb) 741 742 743 744Strain fitness (log2 ratio) -2 -1 0 1 2at 740.267 kb on - strandat 740.267 kb on - strandat 740.295 kb on + strandat 740.844 kb on - strand, within BPHYT_RS23075at 741.201 kb on + strandat 741.540 kb on - strand, within BPHYT_RS23080at 741.658 kb on + strand, within BPHYT_RS23080at 741.835 kb on + strand, within BPHYT_RS23080at 741.837 kb on + strand, within BPHYT_RS23080at 741.837 kb on + strand, within BPHYT_RS23080at 741.838 kb on - strand, within BPHYT_RS23080at 741.838 kb on - strand, within BPHYT_RS23080at 742.182 kb on + strand, within BPHYT_RS23080at 743.231 kb on + strand, within BPHYT_RS23085at 743.278 kb on + strand, within BPHYT_RS23085at 743.279 kb on - strand, within BPHYT_RS23085at 743.368 kb on + strand, within BPHYT_RS23085at 743.555 kb on - strand, within BPHYT_RS23085at 743.847 kb on + strand, within BPHYT_RS23085at 743.924 kb on - strand, within BPHYT_RS23085at 744.029 kb on - strand, within BPHYT_RS23085

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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740,267 - +0.8
740,267 - -0.5
740,295 + -0.6
740,844 - BPHYT_RS23075 0.72 -1.3
741,201 + +0.3
741,540 - BPHYT_RS23080 0.16 -1.3
741,658 + BPHYT_RS23080 0.23 -0.9
741,835 + BPHYT_RS23080 0.32 +1.7
741,837 + BPHYT_RS23080 0.33 -0.2
741,837 + BPHYT_RS23080 0.33 -2.1
741,838 - BPHYT_RS23080 0.33 -0.6
741,838 - BPHYT_RS23080 0.33 -0.0
742,182 + BPHYT_RS23080 0.52 -1.6
743,231 + BPHYT_RS23085 0.10 +0.1
743,278 + BPHYT_RS23085 0.13 -1.2
743,279 - BPHYT_RS23085 0.13 -0.4
743,368 + BPHYT_RS23085 0.20 +1.0
743,555 - BPHYT_RS23085 0.33 +0.8
743,847 + BPHYT_RS23085 0.54 +2.6
743,924 - BPHYT_RS23085 0.59 -1.0
744,029 - BPHYT_RS23085 0.67 -0.2

Or see this region's nucleotide sequence