Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23005

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23000 and BPHYT_RS23005 are separated by 765 nucleotidesBPHYT_RS23005 and BPHYT_RS23010 are separated by 113 nucleotides BPHYT_RS23000: BPHYT_RS23000 - molybdopterin-dependent oxidoreductase, at 720,276 to 720,872 _RS23000 BPHYT_RS23005: BPHYT_RS23005 - carboxymuconolactone decarboxylase, at 721,638 to 722,186 _RS23005 BPHYT_RS23010: BPHYT_RS23010 - transcriptional regulator, at 722,300 to 723,157 _RS23010 Position (kb) 721 722 723Strain fitness (log2 ratio) -1 0 1at 720.973 kb on + strandat 721.420 kb on + strandat 721.544 kb on + strandat 721.545 kb on - strandat 722.194 kb on - strandat 722.482 kb on + strand, within BPHYT_RS23010at 722.518 kb on + strand, within BPHYT_RS23010

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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720,973 + -0.6
721,420 + -1.4
721,544 + -0.8
721,545 - +1.6
722,194 - -1.3
722,482 + BPHYT_RS23010 0.21 -0.5
722,518 + BPHYT_RS23010 0.25 +0.3

Or see this region's nucleotide sequence