Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22980

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22975 and BPHYT_RS22980 are separated by 52 nucleotidesBPHYT_RS22980 and BPHYT_RS22985 are separated by 103 nucleotides BPHYT_RS22975: BPHYT_RS22975 - hypothetical protein, at 713,401 to 715,545 _RS22975 BPHYT_RS22980: BPHYT_RS22980 - LysR family transcriptional regulator, at 715,598 to 716,494 _RS22980 BPHYT_RS22985: BPHYT_RS22985 - hypothetical protein, at 716,598 to 717,713 _RS22985 Position (kb) 715 716 717Strain fitness (log2 ratio) -1 0 1 2 3at 715.137 kb on - strand, within BPHYT_RS22975at 715.324 kb on - strand, within BPHYT_RS22975at 715.534 kb on - strandat 715.539 kb on + strandat 715.674 kb on + strandat 716.529 kb on + strandat 717.060 kb on + strand, within BPHYT_RS22985at 717.291 kb on - strand, within BPHYT_RS22985at 717.475 kb on - strand, within BPHYT_RS22985

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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715,137 - BPHYT_RS22975 0.81 -0.5
715,324 - BPHYT_RS22975 0.90 +0.5
715,534 - -0.4
715,539 + -0.9
715,674 + -0.2
716,529 + +2.8
717,060 + BPHYT_RS22985 0.41 -0.9
717,291 - BPHYT_RS22985 0.62 +0.1
717,475 - BPHYT_RS22985 0.79 +0.2

Or see this region's nucleotide sequence