Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21605

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21600 and BPHYT_RS21605 are separated by 106 nucleotidesBPHYT_RS21605 and BPHYT_RS21610 are separated by 188 nucleotides BPHYT_RS21600: BPHYT_RS21600 - 3-oxoacyl-ACP reductase, at 402,574 to 403,284 _RS21600 BPHYT_RS21605: BPHYT_RS21605 - NmrA family transcriptional regulator, at 403,391 to 404,143 _RS21605 BPHYT_RS21610: BPHYT_RS21610 - DNA-binding protein, at 404,332 to 405,861 _RS21610 Position (kb) 403 404 405Strain fitness (log2 ratio) -2 -1 0 1 2at 402.461 kb on + strandat 402.522 kb on + strandat 402.792 kb on - strand, within BPHYT_RS21600at 403.034 kb on + strand, within BPHYT_RS21600at 403.035 kb on - strand, within BPHYT_RS21600at 403.035 kb on - strand, within BPHYT_RS21600at 403.035 kb on - strand, within BPHYT_RS21600at 403.197 kb on - strand, within BPHYT_RS21600at 403.290 kb on - strandat 403.290 kb on - strandat 403.349 kb on + strandat 403.350 kb on - strandat 403.380 kb on + strandat 404.293 kb on + strandat 404.546 kb on - strand, within BPHYT_RS21610at 404.546 kb on - strand, within BPHYT_RS21610at 404.898 kb on + strand, within BPHYT_RS21610at 404.899 kb on - strand, within BPHYT_RS21610

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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402,461 + +0.1
402,522 + +0.2
402,792 - BPHYT_RS21600 0.31 -0.4
403,034 + BPHYT_RS21600 0.65 -1.3
403,035 - BPHYT_RS21600 0.65 -1.3
403,035 - BPHYT_RS21600 0.65 -2.3
403,035 - BPHYT_RS21600 0.65 -0.2
403,197 - BPHYT_RS21600 0.88 +1.3
403,290 - +0.4
403,290 - +1.9
403,349 + -0.1
403,350 - -1.1
403,380 + -0.2
404,293 + -0.6
404,546 - BPHYT_RS21610 0.14 -1.2
404,546 - BPHYT_RS21610 0.14 -1.1
404,898 + BPHYT_RS21610 0.37 -0.3
404,899 - BPHYT_RS21610 0.37 +0.1

Or see this region's nucleotide sequence