Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21160

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21150 and BPHYT_RS21155 are separated by 10 nucleotidesBPHYT_RS21155 and BPHYT_RS21160 overlap by 4 nucleotides BPHYT_RS21150: BPHYT_RS21150 - NAD(P) transhydrogenase subunit alpha, at 305,711 to 306,829 _RS21150 BPHYT_RS21155: BPHYT_RS21155 - NAD(P) transhydrogenase, at 306,840 to 307,196 _RS21155 BPHYT_RS21160: BPHYT_RS21160 - NAD(P) transhydrogenase subunit beta, at 307,193 to 308,656 _RS21160 Position (kb) 307 308 309Strain fitness (log2 ratio) -1 0 1at 306.699 kb on - strand, within BPHYT_RS21150at 306.847 kb on + strandat 306.883 kb on + strand, within BPHYT_RS21155at 306.894 kb on + strand, within BPHYT_RS21155at 307.229 kb on + strandat 308.036 kb on + strand, within BPHYT_RS21160at 308.036 kb on + strand, within BPHYT_RS21160at 308.125 kb on - strand, within BPHYT_RS21160at 308.872 kb on + strandat 308.872 kb on + strandat 308.873 kb on - strandat 309.128 kb on + strandat 309.129 kb on - strandat 309.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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306,699 - BPHYT_RS21150 0.88 -0.7
306,847 + +0.0
306,883 + BPHYT_RS21155 0.12 -0.8
306,894 + BPHYT_RS21155 0.15 -0.9
307,229 + -0.3
308,036 + BPHYT_RS21160 0.58 +0.1
308,036 + BPHYT_RS21160 0.58 +0.9
308,125 - BPHYT_RS21160 0.64 +0.6
308,872 + -0.7
308,872 + -0.7
308,873 - -0.7
309,128 + -1.0
309,129 - +0.1
309,315 - -0.1

Or see this region's nucleotide sequence