Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21110

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21105 and BPHYT_RS21110 are separated by 67 nucleotidesBPHYT_RS21110 and BPHYT_RS21115 are separated by 32 nucleotides BPHYT_RS21105: BPHYT_RS21105 - phenylhydantoinase, at 296,186 to 297,607 _RS21105 BPHYT_RS21110: BPHYT_RS21110 - FO synthase, at 297,675 to 298,835 _RS21110 BPHYT_RS21115: BPHYT_RS21115 - radical SAM protein, at 298,868 to 300,139 _RS21115 Position (kb) 297 298 299Strain fitness (log2 ratio) -1 0 1at 297.119 kb on - strand, within BPHYT_RS21105at 297.119 kb on - strand, within BPHYT_RS21105at 297.316 kb on + strand, within BPHYT_RS21105at 297.317 kb on - strand, within BPHYT_RS21105at 297.631 kb on - strandat 297.675 kb on - strandat 297.789 kb on + strandat 297.790 kb on - strandat 297.982 kb on + strand, within BPHYT_RS21110at 298.039 kb on - strand, within BPHYT_RS21110at 298.502 kb on + strand, within BPHYT_RS21110at 298.705 kb on - strand, within BPHYT_RS21110at 299.046 kb on + strand, within BPHYT_RS21115at 299.117 kb on + strand, within BPHYT_RS21115at 299.356 kb on - strand, within BPHYT_RS21115at 299.361 kb on - strand, within BPHYT_RS21115at 299.410 kb on + strand, within BPHYT_RS21115at 299.555 kb on - strand, within BPHYT_RS21115at 299.571 kb on - strand, within BPHYT_RS21115at 299.696 kb on + strand, within BPHYT_RS21115at 299.697 kb on - strand, within BPHYT_RS21115at 299.749 kb on + strand, within BPHYT_RS21115at 299.750 kb on - strand, within BPHYT_RS21115at 299.823 kb on + strand, within BPHYT_RS21115

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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297,119 - BPHYT_RS21105 0.66 +0.0
297,119 - BPHYT_RS21105 0.66 -0.5
297,316 + BPHYT_RS21105 0.79 -1.3
297,317 - BPHYT_RS21105 0.80 -1.4
297,631 - +0.8
297,675 - -1.0
297,789 + -0.4
297,790 - -0.5
297,982 + BPHYT_RS21110 0.26 -0.2
298,039 - BPHYT_RS21110 0.31 -0.3
298,502 + BPHYT_RS21110 0.71 -0.6
298,705 - BPHYT_RS21110 0.89 -0.5
299,046 + BPHYT_RS21115 0.14 -1.4
299,117 + BPHYT_RS21115 0.20 -1.1
299,356 - BPHYT_RS21115 0.38 -1.7
299,361 - BPHYT_RS21115 0.39 +0.5
299,410 + BPHYT_RS21115 0.43 +0.3
299,555 - BPHYT_RS21115 0.54 -0.0
299,571 - BPHYT_RS21115 0.55 -1.7
299,696 + BPHYT_RS21115 0.65 -0.2
299,697 - BPHYT_RS21115 0.65 -0.8
299,749 + BPHYT_RS21115 0.69 -0.2
299,750 - BPHYT_RS21115 0.69 -0.6
299,823 + BPHYT_RS21115 0.75 +1.2

Or see this region's nucleotide sequence