Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20190

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20190 and BPHYT_RS20195 are separated by 80 nucleotides BPHYT_RS20190: BPHYT_RS20190 - membrane protein, at 75,390 to 76,658 _RS20190 BPHYT_RS20195: BPHYT_RS20195 - hypothetical protein, at 76,739 to 77,842 _RS20195 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 74.665 kb on + strandat 75.296 kb on - strandat 75.308 kb on + strandat 75.820 kb on + strand, within BPHYT_RS20190at 76.164 kb on + strand, within BPHYT_RS20190at 76.179 kb on + strand, within BPHYT_RS20190at 76.231 kb on + strand, within BPHYT_RS20190at 76.232 kb on - strand, within BPHYT_RS20190at 76.256 kb on - strand, within BPHYT_RS20190at 76.442 kb on - strand, within BPHYT_RS20190

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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74,665 + +0.4
75,296 - -0.2
75,308 + -0.9
75,820 + BPHYT_RS20190 0.34 -2.2
76,164 + BPHYT_RS20190 0.61 +0.1
76,179 + BPHYT_RS20190 0.62 -2.0
76,231 + BPHYT_RS20190 0.66 +0.5
76,232 - BPHYT_RS20190 0.66 +0.6
76,256 - BPHYT_RS20190 0.68 +0.6
76,442 - BPHYT_RS20190 0.83 -1.5

Or see this region's nucleotide sequence