Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19060

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
4,277,091	+		BPHYT_RS19055	0.31	-1.3
4,277,091	+		BPHYT_RS19055	0.31	+0.3
4,277,091	+		BPHYT_RS19055	0.31	+0.1
4,277,131	+		BPHYT_RS19055	0.36	-0.6
4,277,131	+		BPHYT_RS19055	0.36	+0.3
4,277,132	-		BPHYT_RS19055	0.36	+0.3
4,277,132	-		BPHYT_RS19055	0.36	-3.8
4,277,136	+		BPHYT_RS19055	0.36	+0.1
4,277,136	+		BPHYT_RS19055	0.36	-0.3
4,277,136	+		BPHYT_RS19055	0.36	+0.1
4,277,137	-		BPHYT_RS19055	0.36	+0.5
4,277,140	+		BPHYT_RS19055	0.37	-0.3
4,277,140	+		BPHYT_RS19055	0.37	-0.1
4,277,140	+		BPHYT_RS19055	0.37	-0.5
4,277,140	+		BPHYT_RS19055	0.37	-1.0
4,277,141	-		BPHYT_RS19055	0.37	+1.0
4,277,141	-		BPHYT_RS19055	0.37	+1.5
4,277,141	-		BPHYT_RS19055	0.37	+1.2
4,277,141	-		BPHYT_RS19055	0.37	+2.2
4,277,143	-		BPHYT_RS19055	0.37	+3.6
4,277,143	-		BPHYT_RS19055	0.37	+0.2
4,277,210	-		BPHYT_RS19055	0.45	-0.8
4,277,210	-		BPHYT_RS19055	0.45	-1.8
4,277,263	+		BPHYT_RS19055	0.52	-0.2
4,277,264	-		BPHYT_RS19055	0.52	+0.1
4,277,264	-		BPHYT_RS19055	0.52	+1.0
4,277,385	+		BPHYT_RS19055	0.66	+0.7
4,277,385	+		BPHYT_RS19055	0.66	+0.9
4,277,386	-		BPHYT_RS19055	0.67	-0.4
4,277,386	-		BPHYT_RS19055	0.67	+1.7
4,277,472	-		BPHYT_RS19055	0.77	-0.3
4,277,472	-		BPHYT_RS19055	0.77	-1.1
4,277,479	+		BPHYT_RS19055	0.78	+0.5
4,277,525	-		BPHYT_RS19055	0.83	-0.1
4,277,656	+				-0.4
4,277,656	+				+1.4
4,277,656	+				-1.3
4,277,657	-				-0.0
4,277,657	-				+1.1
4,277,657	-				+0.0
4,277,660	+				-0.6
4,277,660	+				-1.2
4,277,660	+				+0.8
4,277,661	-				-1.4
4,277,661	-				-0.0
4,277,689	+				-0.0
4,277,689	+				-0.7
4,277,690	-				-0.7
4,277,693	+				-0.7
4,277,693	+				+0.3
4,277,693	+				+2.0
4,277,693	+				-0.3
4,277,694	-				+0.4
4,277,881	-		BPHYT_RS19060	0.10	-0.1
4,277,895	+		BPHYT_RS19060	0.12	-0.5
4,278,025	+		BPHYT_RS19060	0.26	-2.0
4,278,025	+		BPHYT_RS19060	0.26	-0.6
4,278,025	+		BPHYT_RS19060	0.26	-0.1
4,278,026	-		BPHYT_RS19060	0.27	-0.1
4,278,060	+		BPHYT_RS19060	0.30	+0.0
4,278,061	-		BPHYT_RS19060	0.30	-1.3
4,278,360	+		BPHYT_RS19060	0.64	-0.1
4,278,360	+		BPHYT_RS19060	0.64	-1.3
4,278,708	-				+0.3
4,278,708	-				+0.3
4,278,811	-				-0.1
4,278,811	-				+1.7
4,278,859	+				-0.5
4,278,860	-				-0.6
4,278,860	-				+0.6
4,278,860	-				-1.5
4,279,066	-		BPHYT_RS19065	0.42	+0.1
4,279,160	+		BPHYT_RS19065	0.58	-1.4
4,279,160	+		BPHYT_RS19065	0.58	+0.8
4,279,160	+		BPHYT_RS19065	0.58	-0.9
4,279,161	-		BPHYT_RS19065	0.58	-1.0
4,279,161	-		BPHYT_RS19065	0.58	-0.7
4,279,207	+		BPHYT_RS19065	0.66	+0.3
4,279,207	+		BPHYT_RS19065	0.66	+0.2
4,279,207	+		BPHYT_RS19065	0.66	-0.2
4,279,207	+		BPHYT_RS19065	0.66	+0.1
4,279,207	+		BPHYT_RS19065	0.66	+1.3
4,279,208	-		BPHYT_RS19065	0.66	-1.0
4,279,208	-		BPHYT_RS19065	0.66	-1.1
4,279,209	+		BPHYT_RS19065	0.66	+1.6
4,279,267	+		BPHYT_RS19065	0.76	-1.8
4,279,399	-				-0.2
4,279,435	+				+0.0
4,279,450	-				+0.3
4,279,496	-				+0.8
4,279,582	+				-1.3
4,279,620	+				+0.0
4,279,620	+				+0.5
4,279,620	+				+1.0
4,279,620	+				+0.1
4,279,621	-				+0.9
4,279,621	-				+1.0
4,279,621	-				-1.1
4,279,626	+				-1.6
4,279,627	-				-0.7
4,279,627	-				+0.0