Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17315

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17305 and BPHYT_RS17310 are separated by 218 nucleotidesBPHYT_RS17310 and BPHYT_RS17315 are separated by 189 nucleotidesBPHYT_RS17315 and BPHYT_RS17320 are separated by 314 nucleotidesBPHYT_RS17320 and BPHYT_RS17325 are separated by 68 nucleotidesBPHYT_RS17325 and BPHYT_RS17330 are separated by 17 nucleotides BPHYT_RS17305: BPHYT_RS17305 - amidohydrolase, at 3,922,516 to 3,923,712 _RS17305 BPHYT_RS17310: BPHYT_RS17310 - 5S ribosomal RNA, at 3,923,931 to 3,924,044 _RS17310 BPHYT_RS17315: BPHYT_RS17315 - 23S ribosomal RNA, at 3,924,234 to 3,927,136 _RS17315 BPHYT_RS17320: BPHYT_RS17320 - tRNA-Ala, at 3,927,451 to 3,927,526 _RS17320 BPHYT_RS17325: BPHYT_RS17325 - tRNA-Ile, at 3,927,595 to 3,927,671 _RS17325 BPHYT_RS17330: BPHYT_RS17330 - 16S ribosomal RNA, at 3,927,689 to 3,929,283 _RS17330 Position (kb) 3924 3925 3926 3927 3928Strain fitness (log2 ratio) -2 -1 0 1 2at 3923.304 kb on + strand, within BPHYT_RS17305at 3923.305 kb on - strand, within BPHYT_RS17305at 3923.363 kb on - strand, within BPHYT_RS17305at 3923.630 kb on - strandat 3923.630 kb on - strandat 3923.710 kb on + strandat 3923.710 kb on + strandat 3923.710 kb on + strandat 3923.711 kb on - strandat 3923.711 kb on - strandat 3923.759 kb on - strandat 3923.804 kb on + strandat 3923.804 kb on + strandat 3923.805 kb on - strandat 3923.805 kb on - strandat 3923.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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3,923,304 + BPHYT_RS17305 0.66 -0.6
3,923,305 - BPHYT_RS17305 0.66 -0.2
3,923,363 - BPHYT_RS17305 0.71 -0.6
3,923,630 - +1.9
3,923,630 - +2.5
3,923,710 + -0.8
3,923,710 + -0.5
3,923,710 + -0.5
3,923,711 - +0.7
3,923,711 - -0.8
3,923,759 - -2.6
3,923,804 + +0.9
3,923,804 + +0.9
3,923,805 - -1.8
3,923,805 - +0.5
3,923,805 - -0.4

Or see this region's nucleotide sequence