Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17025

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
3,859,044	+		BPHYT_RS17020	0.50	-1.1
3,859,212	+		BPHYT_RS17020	0.69	+0.2
3,859,240	+		BPHYT_RS17020	0.72	-0.5
3,859,241	-		BPHYT_RS17020	0.72	-1.2
3,859,241	-		BPHYT_RS17020	0.72	-0.8
3,859,241	-		BPHYT_RS17020	0.72	+0.9
3,859,290	+		BPHYT_RS17020	0.77	-1.1
3,859,293	+		BPHYT_RS17020	0.78	-0.3
3,859,293	+		BPHYT_RS17020	0.78	-1.2
3,859,293	+		BPHYT_RS17020	0.78	-1.6
3,859,294	-		BPHYT_RS17020	0.78	-0.4
3,859,294	-		BPHYT_RS17020	0.78	-0.3
3,859,412	-				-2.1
3,859,412	-				-0.8
3,859,437	-				+4.7
3,859,493	-				+1.1
3,859,493	-				+0.4
3,859,493	-				+1.6
3,859,504	+				-1.5
3,859,504	+				-0.1
3,859,505	-				+1.2
3,859,505	-				+2.5
3,859,542	+				-0.4
3,859,542	+				-1.6
3,859,542	+				+2.5
3,859,649	+				-1.1
3,859,733	+		BPHYT_RS17025	0.14	+1.2
3,860,002	+		BPHYT_RS17025	0.33	+0.1
3,860,003	-		BPHYT_RS17025	0.33	+2.5
3,860,028	+		BPHYT_RS17025	0.35	+0.1
3,860,128	+		BPHYT_RS17025	0.42	-0.3
3,860,563	+		BPHYT_RS17025	0.73	-0.0
3,860,564	-		BPHYT_RS17025	0.73	+2.5
3,860,564	-		BPHYT_RS17025	0.73	-1.9
3,860,587	+		BPHYT_RS17025	0.75	-0.0
3,860,587	+		BPHYT_RS17025	0.75	-0.6
3,860,818	+				-0.0
3,860,941	+				+1.0
3,861,054	+				-0.9
3,861,365	+		BPHYT_RS17030	0.69	+0.6
3,861,515	+				-0.2
3,861,515	+				-1.2
3,861,596	+				-0.2