Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16535

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
3,747,255	+		BPHYT_RS16530	0.52	-0.9
3,747,255	+		BPHYT_RS16530	0.52	-0.6
3,747,266	+		BPHYT_RS16530	0.53	+0.2
3,747,381	+		BPHYT_RS16530	0.65	+0.2
3,747,382	-		BPHYT_RS16530	0.65	+0.3
3,747,382	-		BPHYT_RS16530	0.65	+1.6
3,747,724	+				+0.2
3,747,726	+				-0.1
3,747,727	-				-1.2
3,747,727	-				-0.6
3,747,729	+				-0.3
3,747,737	+				+0.6
3,747,738	-				-0.3
3,747,797	+				-0.2
3,747,797	+				-0.4
3,747,798	-				-1.1
3,747,940	+				+1.9
3,747,940	+				-0.3
3,747,940	+				+0.9
3,747,966	-				-0.5
3,748,369	+		BPHYT_RS16535	0.35	-0.1
3,748,369	+		BPHYT_RS16535	0.35	-0.0
3,748,379	-		BPHYT_RS16535	0.35	-0.9
3,748,379	-		BPHYT_RS16535	0.35	-1.8
3,748,568	-		BPHYT_RS16535	0.49	+1.9
3,748,603	+		BPHYT_RS16535	0.52	-0.3
3,748,651	+		BPHYT_RS16535	0.55	+0.8
3,748,652	-		BPHYT_RS16535	0.55	+0.1
3,748,652	-		BPHYT_RS16535	0.55	+1.5
3,748,652	-		BPHYT_RS16535	0.55	+0.7
3,748,738	+		BPHYT_RS16535	0.62	-0.3
3,748,739	-		BPHYT_RS16535	0.62	+0.5
3,748,753	+		BPHYT_RS16535	0.63	+0.3
3,748,753	+		BPHYT_RS16535	0.63	-0.9
3,748,753	+		BPHYT_RS16535	0.63	-0.3
3,748,754	-		BPHYT_RS16535	0.63	+1.5
3,748,754	-		BPHYT_RS16535	0.63	+0.7
3,748,754	-		BPHYT_RS16535	0.63	+2.2
3,748,885	+		BPHYT_RS16535	0.72	-0.6
3,749,057	+		BPHYT_RS16535	0.85	-1.7
3,749,214	-				-0.4
3,749,263	+				-0.9
3,749,264	-				-0.9
3,749,264	-				-0.7
3,749,430	+		BPHYT_RS16540	0.11	+1.4
3,749,431	-		BPHYT_RS16540	0.11	-0.3
3,749,431	-		BPHYT_RS16540	0.11	+0.6
3,749,431	-		BPHYT_RS16540	0.11	+0.3
3,749,431	-		BPHYT_RS16540	0.11	+3.5
3,749,431	-		BPHYT_RS16540	0.11	-2.1
3,749,510	+		BPHYT_RS16540	0.18	-1.9
3,749,511	-		BPHYT_RS16540	0.19	-0.0
3,749,715	-		BPHYT_RS16540	0.38	-0.1
3,749,828	+		BPHYT_RS16540	0.48	-0.8
3,749,828	+		BPHYT_RS16540	0.48	-0.2
3,749,829	-		BPHYT_RS16540	0.48	+1.0
3,749,963	+		BPHYT_RS16540	0.61	-0.8
3,749,963	+		BPHYT_RS16540	0.61	+1.3
3,749,964	-		BPHYT_RS16540	0.61	-0.5
3,749,978	+		BPHYT_RS16540	0.62	+0.3
3,749,990	+		BPHYT_RS16540	0.63	-0.7
3,749,990	+		BPHYT_RS16540	0.63	-0.2
3,750,062	+		BPHYT_RS16540	0.70	+1.0
3,750,062	+		BPHYT_RS16540	0.70	+1.6