Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15405

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
3,495,474	-		BPHYT_RS15400	0.11	+0.9
3,495,956	+				-1.3
3,495,956	+				-1.1
3,495,957	-				+0.5
3,495,957	-				-0.1
3,496,003	-				-1.5
3,496,008	+				-0.5
3,496,072	+				-0.8
3,496,073	-				+0.6
3,496,073	-				+2.5
3,496,134	+		BPHYT_RS15405	0.10	+0.0
3,496,134	+		BPHYT_RS15405	0.10	-0.2
3,496,135	-		BPHYT_RS15405	0.11	-0.8
3,496,135	-		BPHYT_RS15405	0.11	+1.4
3,496,219	+		BPHYT_RS15405	0.18	-0.1
3,496,220	-		BPHYT_RS15405	0.18	-0.2
3,496,270	+		BPHYT_RS15405	0.22	-0.1
3,496,271	-		BPHYT_RS15405	0.22	+0.2
3,496,282	+		BPHYT_RS15405	0.23	+0.2
3,496,282	+		BPHYT_RS15405	0.23	+0.3
3,496,282	+		BPHYT_RS15405	0.23	-0.3
3,496,282	+		BPHYT_RS15405	0.23	-1.6
3,496,282	+		BPHYT_RS15405	0.23	-0.4
3,496,402	+		BPHYT_RS15405	0.33	+0.5
3,496,403	-		BPHYT_RS15405	0.33	-1.7
3,496,458	+		BPHYT_RS15405	0.38	-0.8
3,496,626	+		BPHYT_RS15405	0.52	-0.1
3,496,645	+		BPHYT_RS15405	0.53	-0.5
3,496,645	+		BPHYT_RS15405	0.53	-1.6
3,496,645	+		BPHYT_RS15405	0.53	-0.7
3,496,646	-		BPHYT_RS15405	0.53	+0.2
3,496,646	-		BPHYT_RS15405	0.53	+0.4
3,496,729	+		BPHYT_RS15405	0.60	+0.4
3,496,987	+		BPHYT_RS15405	0.82	-1.1
3,496,987	+		BPHYT_RS15405	0.82	-0.6
3,496,988	-		BPHYT_RS15405	0.82	+0.3
3,496,988	-		BPHYT_RS15405	0.82	-0.5
3,497,046	+		BPHYT_RS15405	0.87	-0.5
3,497,122	+				+1.1
3,497,122	+				+0.5
3,497,122	+				-0.1
3,497,619	+		BPHYT_RS15410	0.26	-0.3
3,497,620	-		BPHYT_RS15410	0.26	-1.0
3,497,734	-		BPHYT_RS15410	0.36	-1.3
3,497,806	-		BPHYT_RS15410	0.42	-1.7