Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12800

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,915,002	-		BPHYT_RS12790	0.61	+0.8
2,915,241	+				+0.3
2,915,259	+				-0.3
2,915,260	-				+1.8
2,915,347	+				-1.6
2,915,347	+				+1.1
2,915,348	-				-2.3
2,915,429	-		BPHYT_RS12795	0.35	-1.7
2,915,513	+		BPHYT_RS12795	0.70	-0.0
2,915,513	+		BPHYT_RS12795	0.70	-0.3
2,915,514	-		BPHYT_RS12795	0.70	-0.7
2,915,514	-		BPHYT_RS12795	0.70	-1.1
2,915,514	-		BPHYT_RS12795	0.70	+0.2
2,915,521	+		BPHYT_RS12795	0.73	-0.9
2,915,521	+		BPHYT_RS12795	0.73	+0.5
2,915,521	+		BPHYT_RS12795	0.73	-2.5
2,915,521	+		BPHYT_RS12795	0.73	-0.2
2,915,522	-		BPHYT_RS12795	0.73	-0.9
2,915,522	-		BPHYT_RS12795	0.73	-0.1
2,915,522	-		BPHYT_RS12795	0.73	+1.5
2,915,679	-				+0.0
2,915,679	-				-0.6
2,915,688	+				-1.3
2,915,688	+				+0.2
2,915,689	-				-0.7
2,915,783	+				-1.5
2,915,783	+				-0.2
2,915,783	+				-1.0
2,915,784	-				-0.3
2,915,784	-				-0.8
2,915,809	+				+0.4
2,915,810	-				+0.5
2,915,812	+				+0.6
2,915,812	+				+0.6
2,915,821	+				+0.7
2,915,821	+				+1.6
2,915,821	+				+0.4
2,915,821	+				-0.3
2,915,822	-				-1.0
2,915,943	+		BPHYT_RS12800	0.16	+0.2
2,915,943	+		BPHYT_RS12800	0.16	+0.1
2,915,944	-		BPHYT_RS12800	0.16	+0.2
2,915,967	+		BPHYT_RS12800	0.20	+0.9
2,915,970	-		BPHYT_RS12800	0.21	+0.1
2,916,033	+		BPHYT_RS12800	0.32	+0.2
2,916,033	+		BPHYT_RS12800	0.32	+0.6
2,916,034	-		BPHYT_RS12800	0.32	-0.3
2,916,034	-		BPHYT_RS12800	0.32	+0.5
2,916,034	-		BPHYT_RS12800	0.32	-0.2
2,916,034	-		BPHYT_RS12800	0.32	+1.6
2,916,034	-		BPHYT_RS12800	0.32	+0.8
2,916,034	-		BPHYT_RS12800	0.32	+0.6
2,916,043	-		BPHYT_RS12800	0.34	-0.8
2,916,066	+		BPHYT_RS12800	0.38	+0.3
2,916,066	+		BPHYT_RS12800	0.38	+1.2
2,916,067	-		BPHYT_RS12800	0.38	+0.4
2,916,067	-		BPHYT_RS12800	0.38	+0.3
2,916,069	+		BPHYT_RS12800	0.38	+0.0
2,916,069	+		BPHYT_RS12800	0.38	+1.4
2,916,070	-		BPHYT_RS12800	0.38	+0.1
2,916,070	-		BPHYT_RS12800	0.38	-0.2
2,916,070	-		BPHYT_RS12800	0.38	-1.9
2,916,070	-		BPHYT_RS12800	0.38	-0.5
2,916,087	+		BPHYT_RS12800	0.41	+0.5
2,916,088	-		BPHYT_RS12800	0.42	-0.4
2,916,088	-		BPHYT_RS12800	0.42	-0.4
2,916,090	+		BPHYT_RS12800	0.42	+0.4
2,916,090	+		BPHYT_RS12800	0.42	-0.5
2,916,291	-		BPHYT_RS12800	0.78	+0.8
2,916,424	+				-0.8
2,916,550	+				-0.9
2,916,550	+				-0.7
2,916,551	-				+1.7
2,916,566	-				+0.1
2,916,566	-				+0.3
2,916,587	+				+0.1
2,916,652	-				-0.8
2,916,652	-				-1.1
2,916,672	-				-0.0
2,916,717	+				+0.3
2,916,717	+				+1.2
2,916,721	-				-0.7
2,916,808	-		BPHYT_RS12805	0.12	-1.8
2,917,019	+		BPHYT_RS12805	0.27	+1.1
2,917,020	-		BPHYT_RS12805	0.27	-0.4
2,917,020	-		BPHYT_RS12805	0.27	-0.4
2,917,056	-		BPHYT_RS12805	0.29	+0.8
2,917,091	+		BPHYT_RS12805	0.32	+0.7
2,917,092	-		BPHYT_RS12805	0.32	-0.1
2,917,196	+		BPHYT_RS12805	0.39	-0.4
2,917,196	+		BPHYT_RS12805	0.39	+1.3
2,917,196	+		BPHYT_RS12805	0.39	-1.6
2,917,196	+		BPHYT_RS12805	0.39	+1.7
2,917,196	+		BPHYT_RS12805	0.39	-0.9
2,917,196	+		BPHYT_RS12805	0.39	+1.7
2,917,197	-		BPHYT_RS12805	0.39	+1.2
2,917,197	-		BPHYT_RS12805	0.39	+0.3
2,917,197	-		BPHYT_RS12805	0.39	-0.7
2,917,197	-		BPHYT_RS12805	0.39	-1.0
2,917,197	-		BPHYT_RS12805	0.39	-0.4
2,917,197	-		BPHYT_RS12805	0.39	+0.4
2,917,197	-		BPHYT_RS12805	0.39	+0.4
2,917,200	+		BPHYT_RS12805	0.39	+0.6
2,917,200	+		BPHYT_RS12805	0.39	-0.1
2,917,200	+		BPHYT_RS12805	0.39	+1.1
2,917,200	+		BPHYT_RS12805	0.39	-0.9
2,917,200	+		BPHYT_RS12805	0.39	-1.1
2,917,201	-				+2.0
2,917,201	-		BPHYT_RS12805	0.39	-0.4
2,917,201	-		BPHYT_RS12805	0.39	+0.5
2,917,257	-		BPHYT_RS12805	0.43	-0.5