Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08355

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08350 and BPHYT_RS08355 are separated by 351 nucleotidesBPHYT_RS08355 and BPHYT_RS08360 are separated by 337 nucleotides BPHYT_RS08350: BPHYT_RS08350 - thioredoxin, at 1,913,577 to 1,914,209 _RS08350 BPHYT_RS08355: BPHYT_RS08355 - hypothetical protein, at 1,914,561 to 1,914,983 _RS08355 BPHYT_RS08360: BPHYT_RS08360 - LysR family transcriptional regulator, at 1,915,321 to 1,916,211 _RS08360 Position (kb) 1914 1915Strain fitness (log2 ratio) -1 0 1at 1913.619 kb on + strandat 1914.208 kb on - strandat 1914.234 kb on - strandat 1914.295 kb on + strandat 1914.793 kb on - strand, within BPHYT_RS08355at 1915.147 kb on - strandat 1915.290 kb on + strandat 1915.298 kb on + strandat 1915.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,913,619 + +1.3
1,914,208 - -0.8
1,914,234 - -0.2
1,914,295 + -0.9
1,914,793 - BPHYT_RS08355 0.55 -0.6
1,915,147 - +0.5
1,915,290 + +0.9
1,915,298 + +0.9
1,915,333 + -1.2

Or see this region's nucleotide sequence