Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06850

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
1,548,891	-		BPHYT_RS06845	0.51	+0.7
1,548,892	+		BPHYT_RS06845	0.51	-0.5
1,548,892	+		BPHYT_RS06845	0.51	-1.8
1,548,892	+		BPHYT_RS06845	0.51	-1.4
1,548,892	+		BPHYT_RS06845	0.51	+0.6
1,548,893	-		BPHYT_RS06845	0.52	-1.0
1,548,893	-		BPHYT_RS06845	0.52	-0.8
1,549,080	-		BPHYT_RS06845	0.62	-0.4
1,549,420	-		BPHYT_RS06845	0.81	+0.6
1,549,494	+		BPHYT_RS06845	0.85	-0.6
1,549,583	+				+0.5
1,549,584	-				+1.0
1,549,664	+				-0.0
1,549,665	-				-0.6
1,549,665	-				+0.5
1,549,665	-				-0.5
1,549,667	+				-0.3
1,549,668	-				+0.8
1,549,668	-				+0.5
1,549,668	-				-0.3
1,549,668	-				+1.1
1,549,706	+				-1.6
1,549,913	-				+0.8
1,550,256	+		BPHYT_RS06850	0.14	-1.3
1,550,257	-		BPHYT_RS06850	0.14	+0.1
1,550,257	-		BPHYT_RS06850	0.14	-0.8
1,550,324	+		BPHYT_RS06850	0.16	-2.0
1,550,342	+		BPHYT_RS06850	0.16	-0.8
1,550,343	-		BPHYT_RS06850	0.16	-1.4
1,550,351	+		BPHYT_RS06850	0.16	+1.1
1,550,702	-		BPHYT_RS06850	0.26	-0.4
1,550,745	-		BPHYT_RS06850	0.27	-1.9
1,550,774	-		BPHYT_RS06850	0.28	+0.3
1,550,774	-		BPHYT_RS06850	0.28	+1.4
1,550,774	-		BPHYT_RS06850	0.28	-0.3
1,550,780	-		BPHYT_RS06850	0.28	+2.3
1,550,822	-		BPHYT_RS06850	0.30	+0.2
1,550,822	-		BPHYT_RS06850	0.30	+1.5
1,550,822	-		BPHYT_RS06850	0.30	+0.1
1,550,910	-		BPHYT_RS06850	0.32	+0.0
1,550,933	-		BPHYT_RS06850	0.33	-0.5
1,550,961	+		BPHYT_RS06850	0.33	+0.8
1,551,169	+		BPHYT_RS06850	0.39	-0.9
1,551,170	-		BPHYT_RS06850	0.39	-1.0
1,551,171	+		BPHYT_RS06850	0.39	+0.8
1,551,175	+		BPHYT_RS06850	0.39	-0.3
1,551,175	+		BPHYT_RS06850	0.39	+0.5
1,551,175	+		BPHYT_RS06850	0.39	-1.4
1,551,175	+		BPHYT_RS06850	0.39	+1.0
1,551,175	+		BPHYT_RS06850	0.39	-1.0
1,551,176	-		BPHYT_RS06850	0.39	+0.2
1,551,185	-		BPHYT_RS06850	0.40	-0.0
1,551,222	+		BPHYT_RS06850	0.41	+0.3
1,551,223	-		BPHYT_RS06850	0.41	-1.7
1,551,226	+		BPHYT_RS06850	0.41	+0.2
1,551,227	-		BPHYT_RS06850	0.41	+1.5
1,551,227	-		BPHYT_RS06850	0.41	-0.3
1,551,343	+		BPHYT_RS06850	0.44	-0.6
1,551,344	-		BPHYT_RS06850	0.44	-0.1
1,551,344	-		BPHYT_RS06850	0.44	-2.3
1,551,785	-		BPHYT_RS06850	0.56	+1.1
1,551,787	+		BPHYT_RS06850	0.57	+0.2
1,551,787	+		BPHYT_RS06850	0.57	-0.3
1,551,787	+		BPHYT_RS06850	0.57	+0.5
1,551,787	+		BPHYT_RS06850	0.57	+0.0
1,551,854	-		BPHYT_RS06850	0.58	-0.8
1,551,925	-		BPHYT_RS06850	0.60	+0.2
1,551,925	-		BPHYT_RS06850	0.60	-0.4
1,551,985	+		BPHYT_RS06850	0.62	-1.2
1,551,985	+		BPHYT_RS06850	0.62	+0.8
1,551,987	+		BPHYT_RS06850	0.62	+0.2
1,552,195	+		BPHYT_RS06850	0.68	+1.5
1,552,546	+		BPHYT_RS06850	0.78	-2.5
1,552,546	+		BPHYT_RS06850	0.78	-0.5
1,552,830	-		BPHYT_RS06850	0.86	+1.5
1,553,155	+				+1.0
1,553,380	+				+0.2
1,553,380	+				+0.1
1,553,381	-				+0.1
1,553,381	-				+0.2
1,553,465	+				+2.3
1,553,465	+				-1.0
1,553,465	+				+0.4
1,553,466	-				-1.5
1,553,466	-				-1.0
1,553,542	+				-1.2
1,553,584	-		BPHYT_RS06855	0.13	+1.1
1,553,584	-		BPHYT_RS06855	0.13	+0.8
1,553,614	-		BPHYT_RS06855	0.16	+1.0
1,553,675	+		BPHYT_RS06855	0.23	-0.8
1,553,676	-		BPHYT_RS06855	0.23	+0.6
1,553,762	-		BPHYT_RS06855	0.32	+0.5
1,553,979	+		BPHYT_RS06855	0.56	+0.1
1,553,979	+		BPHYT_RS06855	0.56	+0.5
1,553,979	+		BPHYT_RS06855	0.56	+0.4
1,553,979	+		BPHYT_RS06855	0.56	-0.1
1,553,980	-		BPHYT_RS06855	0.56	+0.8
1,553,980	-		BPHYT_RS06855	0.56	+0.5
1,553,988	-		BPHYT_RS06855	0.57	-0.6
1,554,023	+		BPHYT_RS06855	0.61	-0.0
1,554,051	-		BPHYT_RS06855	0.64	+1.0
1,554,057	+		BPHYT_RS06855	0.64	+1.3