Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05865

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05855 and BPHYT_RS05860 overlap by 76 nucleotidesBPHYT_RS05860 and BPHYT_RS05865 are separated by 2 nucleotidesBPHYT_RS05865 and BPHYT_RS05870 are separated by 138 nucleotidesBPHYT_RS05870 and BPHYT_RS05875 are separated by 245 nucleotides BPHYT_RS05855: BPHYT_RS05855 - restriction endonuclease subunit M, at 1,330,442 to 1,331,176 _RS05855 BPHYT_RS05860: BPHYT_RS05860 - ATP-binding protein, at 1,331,101 to 1,331,889 _RS05860 BPHYT_RS05865: BPHYT_RS05865 - integrase, at 1,331,892 to 1,333,418 _RS05865 BPHYT_RS05870: BPHYT_RS05870 - hypothetical protein, at 1,333,557 to 1,333,856 _RS05870 BPHYT_RS05875: BPHYT_RS05875 - acyltransferase, at 1,334,102 to 1,335,166 _RS05875 Position (kb) 1331 1332 1333 1334Strain fitness (log2 ratio) -1 0 1at 1330.895 kb on - strand, within BPHYT_RS05855at 1330.952 kb on - strand, within BPHYT_RS05855at 1330.977 kb on - strand, within BPHYT_RS05855at 1331.012 kb on + strand, within BPHYT_RS05855at 1331.012 kb on + strand, within BPHYT_RS05855at 1333.638 kb on + strand, within BPHYT_RS05870at 1333.647 kb on + strand, within BPHYT_RS05870at 1333.647 kb on + strand, within BPHYT_RS05870at 1333.648 kb on - strand, within BPHYT_RS05870at 1333.648 kb on - strand, within BPHYT_RS05870at 1333.850 kb on - strandat 1334.145 kb on - strandat 1334.266 kb on + strand, within BPHYT_RS05875at 1334.361 kb on - strand, within BPHYT_RS05875

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,330,895 - BPHYT_RS05855 0.62 -0.0
1,330,952 - BPHYT_RS05855 0.69 +0.6
1,330,977 - BPHYT_RS05855 0.73 -0.2
1,331,012 + BPHYT_RS05855 0.78 +0.2
1,331,012 + BPHYT_RS05855 0.78 -0.3
1,333,638 + BPHYT_RS05870 0.27 -0.4
1,333,647 + BPHYT_RS05870 0.30 -0.8
1,333,647 + BPHYT_RS05870 0.30 -1.3
1,333,648 - BPHYT_RS05870 0.30 -1.5
1,333,648 - BPHYT_RS05870 0.30 -0.3
1,333,850 - +0.6
1,334,145 - -0.3
1,334,266 + BPHYT_RS05875 0.15 +0.2
1,334,361 - BPHYT_RS05875 0.24 -0.8

Or see this region's nucleotide sequence