Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04045

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04040 and BPHYT_RS04045 are separated by 281 nucleotidesBPHYT_RS04045 and BPHYT_RS04050 are separated by 117 nucleotides BPHYT_RS04040: BPHYT_RS04040 - hypothetical protein, at 920,671 to 922,146 _RS04040 BPHYT_RS04045: BPHYT_RS04045 - acyltransferase, at 922,428 to 923,582 _RS04045 BPHYT_RS04050: BPHYT_RS04050 - group 1 glycosyl transferase, at 923,700 to 924,905 _RS04050 Position (kb) 922 923 924Strain fitness (log2 ratio) -2 -1 0 1 2at 921.468 kb on + strand, within BPHYT_RS04040at 922.086 kb on - strandat 922.118 kb on - strandat 922.295 kb on + strandat 922.435 kb on + strandat 922.541 kb on + strandat 922.551 kb on + strand, within BPHYT_RS04045at 922.551 kb on + strand, within BPHYT_RS04045at 922.729 kb on - strand, within BPHYT_RS04045at 922.732 kb on - strand, within BPHYT_RS04045at 922.816 kb on - strand, within BPHYT_RS04045at 923.073 kb on + strand, within BPHYT_RS04045at 923.457 kb on + strand, within BPHYT_RS04045at 923.744 kb on + strandat 923.744 kb on + strandat 923.979 kb on - strand, within BPHYT_RS04050at 923.979 kb on - strand, within BPHYT_RS04050at 924.179 kb on - strand, within BPHYT_RS04050at 924.179 kb on - strand, within BPHYT_RS04050at 924.550 kb on + strand, within BPHYT_RS04050

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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921,468 + BPHYT_RS04040 0.54 +0.8
922,086 - +2.5
922,118 - -1.9
922,295 + -0.1
922,435 + -0.2
922,541 + -0.8
922,551 + BPHYT_RS04045 0.11 -1.3
922,551 + BPHYT_RS04045 0.11 -0.8
922,729 - BPHYT_RS04045 0.26 -0.5
922,732 - BPHYT_RS04045 0.26 +2.0
922,816 - BPHYT_RS04045 0.34 +0.2
923,073 + BPHYT_RS04045 0.56 -1.0
923,457 + BPHYT_RS04045 0.89 -0.2
923,744 + -0.5
923,744 + -1.9
923,979 - BPHYT_RS04050 0.23 -0.5
923,979 - BPHYT_RS04050 0.23 -0.8
924,179 - BPHYT_RS04050 0.40 +0.7
924,179 - BPHYT_RS04050 0.40 -0.7
924,550 + BPHYT_RS04050 0.70 -0.3

Or see this region's nucleotide sequence