Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03220 and BPHYT_RS03225 are separated by 128 nucleotides BPHYT_RS03225 and BPHYT_RS03230 are separated by 189 nucleotides
BPHYT_RS03220: BPHYT_RS03220 - Acyl-CoA dehydrogenase (EC 1.3.8.7) <small>(from data)</small>, at 721,553 to 723,340
_RS03220
BPHYT_RS03225: BPHYT_RS03225 - 3-hydroxyacyl-CoA dehydrogenase, at 723,469 to 725,904
_RS03225
BPHYT_RS03230: BPHYT_RS03230 - acetyl-CoA acetyltransferase, at 726,094 to 727,293
_RS03230
Position (kb) 723
724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 722.486 kb on + strand, within BPHYT_RS03220 at 722.609 kb on - strand, within BPHYT_RS03220 at 722.801 kb on + strand, within BPHYT_RS03220 at 722.801 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.844 kb on - strand, within BPHYT_RS03220 at 722.873 kb on + strand, within BPHYT_RS03220 at 722.873 kb on + strand, within BPHYT_RS03220 at 723.190 kb on + strand at 723.215 kb on + strand at 723.450 kb on - strand at 723.494 kb on + strand at 723.925 kb on + strand, within BPHYT_RS03225 at 723.926 kb on - strand, within BPHYT_RS03225 at 724.342 kb on + strand, within BPHYT_RS03225 at 724.393 kb on + strand, within BPHYT_RS03225 at 724.393 kb on + strand, within BPHYT_RS03225 at 724.528 kb on + strand, within BPHYT_RS03225 at 724.528 kb on + strand, within BPHYT_RS03225 at 724.529 kb on - strand, within BPHYT_RS03225 at 724.529 kb on - strand, within BPHYT_RS03225 at 724.534 kb on + strand at 724.681 kb on - strand, within BPHYT_RS03225 at 724.764 kb on + strand, within BPHYT_RS03225 at 724.764 kb on + strand, within BPHYT_RS03225 at 724.889 kb on - strand, within BPHYT_RS03225 at 725.050 kb on + strand, within BPHYT_RS03225 at 725.050 kb on + strand, within BPHYT_RS03225 at 725.051 kb on - strand, within BPHYT_RS03225 at 725.051 kb on - strand, within BPHYT_RS03225 at 725.221 kb on + strand, within BPHYT_RS03225 at 725.902 kb on + strand at 725.923 kb on + strand at 725.997 kb on + strand at 726.012 kb on + strand at 726.118 kb on + strand at 726.118 kb on + strand at 726.118 kb on + strand at 726.119 kb on - strand at 726.119 kb on - strand at 726.138 kb on + strand at 726.139 kb on - strand at 726.346 kb on - strand, within BPHYT_RS03230 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.493 kb on - strand, within BPHYT_RS03230 at 726.513 kb on + strand, within BPHYT_RS03230 at 726.548 kb on - strand, within BPHYT_RS03230 at 726.849 kb on + strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 722,486 + BPHYT_RS03220 0.52 -0.9 722,609 - BPHYT_RS03220 0.59 +1.2 722,801 + BPHYT_RS03220 0.70 +1.0 722,801 + BPHYT_RS03220 0.70 +2.0 722,843 + BPHYT_RS03220 0.72 -0.4 722,843 + BPHYT_RS03220 0.72 +0.7 722,843 + BPHYT_RS03220 0.72 -0.8 722,843 + BPHYT_RS03220 0.72 +1.9 722,844 - BPHYT_RS03220 0.72 +0.4 722,873 + BPHYT_RS03220 0.74 -1.0 722,873 + BPHYT_RS03220 0.74 -0.1 723,190 + -1.6 723,215 + -0.2 723,450 - -0.8 723,494 + +0.0 723,925 + BPHYT_RS03225 0.19 +1.2 723,926 - BPHYT_RS03225 0.19 -1.1 724,342 + BPHYT_RS03225 0.36 -0.2 724,393 + BPHYT_RS03225 0.38 -1.0 724,393 + BPHYT_RS03225 0.38 +0.5 724,528 + BPHYT_RS03225 0.43 +0.2 724,528 + BPHYT_RS03225 0.43 +1.3 724,529 - BPHYT_RS03225 0.44 +0.3 724,529 - BPHYT_RS03225 0.44 -0.1 724,534 + +0.5 724,681 - BPHYT_RS03225 0.50 -0.8 724,764 + BPHYT_RS03225 0.53 -1.2 724,764 + BPHYT_RS03225 0.53 -0.1 724,889 - BPHYT_RS03225 0.58 +0.2 725,050 + BPHYT_RS03225 0.65 +0.7 725,050 + BPHYT_RS03225 0.65 -0.2 725,051 - BPHYT_RS03225 0.65 +0.4 725,051 - BPHYT_RS03225 0.65 +1.5 725,221 + BPHYT_RS03225 0.72 +0.2 725,902 + -1.2 725,923 + -0.7 725,997 + -0.2 726,012 + -0.7 726,118 + +0.9 726,118 + -1.1 726,118 + +1.4 726,119 - +0.3 726,119 - +0.4 726,138 + -1.8 726,139 - +1.8 726,346 - BPHYT_RS03230 0.21 -1.2 726,492 + BPHYT_RS03230 0.33 +0.2 726,492 + BPHYT_RS03230 0.33 -1.2 726,493 - BPHYT_RS03230 0.33 +0.3 726,513 + BPHYT_RS03230 0.35 +0.6 726,548 - BPHYT_RS03230 0.38 -1.8 726,849 + BPHYT_RS03230 0.63 -1.2 726,850 - BPHYT_RS03230 0.63 -0.1 726,850 - BPHYT_RS03230 0.63 -1.8 726,850 - BPHYT_RS03230 0.63 -0.1
Or see this region's nucleotide sequence