Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02930 and BPHYT_RS02935 are separated by 161 nucleotides BPHYT_RS02935 and BPHYT_RS02940 are separated by 91 nucleotides BPHYT_RS02940 and BPHYT_RS02945 are separated by 58 nucleotides
BPHYT_RS02930: BPHYT_RS02930 - KpsF/GutQ family protein, at 650,730 to 651,713
_RS02930
BPHYT_RS02935: BPHYT_RS02935 - potassium transporter, at 651,875 to 653,878
_RS02935
BPHYT_RS02940: BPHYT_RS02940 - adenine phosphoribosyltransferase, at 653,970 to 654,536
_RS02940
BPHYT_RS02945: BPHYT_RS02945 - lysine transporter LysE, at 654,595 to 655,209
_RS02945
Position (kb) 651
652
653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 651.107 kb on - strand, within BPHYT_RS02930 at 651.107 kb on - strand, within BPHYT_RS02930 at 651.723 kb on - strand at 651.724 kb on + strand at 651.724 kb on + strand at 651.724 kb on + strand at 651.856 kb on + strand at 651.857 kb on - strand at 652.324 kb on + strand, within BPHYT_RS02935 at 652.464 kb on + strand, within BPHYT_RS02935 at 652.465 kb on - strand, within BPHYT_RS02935 at 652.945 kb on + strand, within BPHYT_RS02935 at 652.945 kb on + strand, within BPHYT_RS02935 at 652.945 kb on + strand, within BPHYT_RS02935 at 653.113 kb on - strand, within BPHYT_RS02935 at 653.113 kb on - strand, within BPHYT_RS02935 at 653.180 kb on + strand, within BPHYT_RS02935 at 653.181 kb on - strand, within BPHYT_RS02935 at 653.327 kb on - strand, within BPHYT_RS02935 at 653.395 kb on + strand, within BPHYT_RS02935 at 653.579 kb on + strand, within BPHYT_RS02935 at 653.580 kb on - strand, within BPHYT_RS02935 at 653.580 kb on - strand, within BPHYT_RS02935 at 653.628 kb on + strand, within BPHYT_RS02935 at 653.628 kb on + strand, within BPHYT_RS02935 at 653.930 kb on - strand at 654.140 kb on + strand, within BPHYT_RS02940 at 654.141 kb on - strand, within BPHYT_RS02940 at 654.211 kb on - strand, within BPHYT_RS02940 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.261 kb on + strand, within BPHYT_RS02940 at 654.262 kb on - strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.282 kb on + strand, within BPHYT_RS02940 at 654.509 kb on + strand at 654.510 kb on - strand at 654.551 kb on + strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.601 kb on - strand at 654.681 kb on + strand, within BPHYT_RS02945 at 654.681 kb on + strand, within BPHYT_RS02945 at 654.832 kb on + strand, within BPHYT_RS02945 at 654.833 kb on - strand, within BPHYT_RS02945
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 651,107 - BPHYT_RS02930 0.38 +0.0 651,107 - BPHYT_RS02930 0.38 -1.8 651,723 - -2.2 651,724 + +0.2 651,724 + +0.2 651,724 + -0.1 651,856 + +1.0 651,857 - -2.4 652,324 + BPHYT_RS02935 0.22 -0.9 652,464 + BPHYT_RS02935 0.29 -0.8 652,465 - BPHYT_RS02935 0.29 -1.3 652,945 + BPHYT_RS02935 0.53 -1.9 652,945 + BPHYT_RS02935 0.53 -1.6 652,945 + BPHYT_RS02935 0.53 -0.7 653,113 - BPHYT_RS02935 0.62 -2.3 653,113 - BPHYT_RS02935 0.62 -0.9 653,180 + BPHYT_RS02935 0.65 -1.8 653,181 - BPHYT_RS02935 0.65 +0.3 653,327 - BPHYT_RS02935 0.72 -0.1 653,395 + BPHYT_RS02935 0.76 -1.7 653,579 + BPHYT_RS02935 0.85 -0.2 653,580 - BPHYT_RS02935 0.85 +0.4 653,580 - BPHYT_RS02935 0.85 +0.1 653,628 + BPHYT_RS02935 0.87 -2.8 653,628 + BPHYT_RS02935 0.87 -1.1 653,930 - -0.2 654,140 + BPHYT_RS02940 0.30 -1.0 654,141 - BPHYT_RS02940 0.30 -0.4 654,211 - BPHYT_RS02940 0.43 -2.4 654,261 + BPHYT_RS02940 0.51 -0.4 654,261 + BPHYT_RS02940 0.51 -0.8 654,262 - BPHYT_RS02940 0.51 -0.7 654,282 + BPHYT_RS02940 0.55 -1.8 654,282 + BPHYT_RS02940 0.55 -2.0 654,282 + BPHYT_RS02940 0.55 +0.4 654,282 + BPHYT_RS02940 0.55 -2.0 654,282 + BPHYT_RS02940 0.55 +0.2 654,282 + BPHYT_RS02940 0.55 -2.6 654,282 + BPHYT_RS02940 0.55 -0.2 654,509 + +0.6 654,510 - +0.2 654,551 + -1.0 654,601 - -0.7 654,601 - +0.3 654,601 - -1.5 654,681 + BPHYT_RS02945 0.14 -1.6 654,681 + BPHYT_RS02945 0.14 -0.6 654,832 + BPHYT_RS02945 0.39 -0.4 654,833 - BPHYT_RS02945 0.39 +0.8
Or see this region's nucleotide sequence