Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01050 and BPHYT_RS01055 are separated by 86 nucleotides BPHYT_RS01055 and BPHYT_RS01060 are separated by 79 nucleotides
BPHYT_RS01050: BPHYT_RS01050 - short-chain dehydrogenase, at 239,774 to 240,649
_RS01050
BPHYT_RS01055: BPHYT_RS01055 - LysR family transcriptional regulator, at 240,736 to 241,665
_RS01055
BPHYT_RS01060: BPHYT_RS01060 - alcohol dehydrogenase, at 241,745 to 242,998
_RS01060
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 239.762 kb on + strand at 239.785 kb on + strand at 239.785 kb on + strand at 239.786 kb on - strand at 239.786 kb on - strand at 239.876 kb on - strand, within BPHYT_RS01050 at 239.961 kb on + strand, within BPHYT_RS01050 at 239.962 kb on - strand, within BPHYT_RS01050 at 240.001 kb on - strand, within BPHYT_RS01050 at 240.133 kb on - strand, within BPHYT_RS01050 at 240.447 kb on - strand, within BPHYT_RS01050 at 240.451 kb on + strand, within BPHYT_RS01050 at 240.451 kb on + strand, within BPHYT_RS01050 at 240.452 kb on - strand, within BPHYT_RS01050 at 240.581 kb on + strand at 240.581 kb on + strand at 240.581 kb on + strand at 240.706 kb on - strand at 240.706 kb on - strand at 240.750 kb on - strand at 240.768 kb on + strand at 241.096 kb on + strand, within BPHYT_RS01055 at 241.182 kb on + strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.244 kb on - strand, within BPHYT_RS01055 at 241.557 kb on + strand, within BPHYT_RS01055 at 241.687 kb on + strand at 241.687 kb on + strand at 241.688 kb on - strand at 242.077 kb on - strand, within BPHYT_RS01060 at 242.077 kb on - strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.557 kb on + strand, within BPHYT_RS01060 at 242.602 kb on - strand, within BPHYT_RS01060 at 242.605 kb on + strand, within BPHYT_RS01060
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 239,762 + -0.3 239,785 + -0.2 239,785 + -1.3 239,786 - +1.0 239,786 - +0.3 239,876 - BPHYT_RS01050 0.12 +0.4 239,961 + BPHYT_RS01050 0.21 -1.0 239,962 - BPHYT_RS01050 0.21 +1.4 240,001 - BPHYT_RS01050 0.26 -1.9 240,133 - BPHYT_RS01050 0.41 +0.7 240,447 - BPHYT_RS01050 0.77 +0.1 240,451 + BPHYT_RS01050 0.77 -1.0 240,451 + BPHYT_RS01050 0.77 -0.5 240,452 - BPHYT_RS01050 0.77 -3.0 240,581 + +0.0 240,581 + -1.1 240,581 + -0.1 240,706 - -0.2 240,706 - +0.6 240,750 - +0.3 240,768 + -0.3 241,096 + BPHYT_RS01055 0.39 +1.1 241,182 + BPHYT_RS01055 0.48 -0.4 241,183 - BPHYT_RS01055 0.48 +0.6 241,183 - BPHYT_RS01055 0.48 -2.1 241,183 - BPHYT_RS01055 0.48 -1.0 241,244 - BPHYT_RS01055 0.55 -1.6 241,557 + BPHYT_RS01055 0.88 -0.3 241,687 + -0.5 241,687 + -0.0 241,688 - -0.5 242,077 - BPHYT_RS01060 0.26 -0.8 242,077 - BPHYT_RS01060 0.26 -2.0 242,367 + BPHYT_RS01060 0.50 -1.0 242,367 + BPHYT_RS01060 0.50 -0.3 242,367 + BPHYT_RS01060 0.50 +0.8 242,557 + BPHYT_RS01060 0.65 +0.2 242,602 - BPHYT_RS01060 0.68 +0.3 242,605 + BPHYT_RS01060 0.69 -0.6
Or see this region's nucleotide sequence