Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00130 and BPHYT_RS00135 are separated by 93 nucleotides BPHYT_RS00135 and BPHYT_RS00140 are separated by 49 nucleotides BPHYT_RS00140 and BPHYT_RS00145 are separated by 114 nucleotides BPHYT_RS00145 and BPHYT_RS00150 are separated by 43 nucleotides
BPHYT_RS00130: BPHYT_RS00130 - ATPase P, at 37,034 to 39,139
_RS00130
BPHYT_RS00135: BPHYT_RS00135 - hypothetical protein, at 39,233 to 39,436
_RS00135
BPHYT_RS00140: BPHYT_RS00140 - MerR family transcriptional regulator, at 39,486 to 39,917
_RS00140
BPHYT_RS00145: BPHYT_RS00145 - hypothetical protein, at 40,032 to 40,232
_RS00145
BPHYT_RS00150: BPHYT_RS00150 - DEAD/DEAH box helicase, at 40,276 to 41,679
_RS00150
Position (kb) 39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 38.285 kb on - strand, within BPHYT_RS00130 at 38.285 kb on - strand, within BPHYT_RS00130 at 38.310 kb on + strand, within BPHYT_RS00130 at 38.751 kb on + strand, within BPHYT_RS00130 at 38.758 kb on + strand, within BPHYT_RS00130 at 38.759 kb on - strand, within BPHYT_RS00130 at 38.759 kb on - strand, within BPHYT_RS00130 at 39.053 kb on + strand at 39.053 kb on + strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.456 kb on - strand at 39.543 kb on + strand, within BPHYT_RS00140 at 39.592 kb on - strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.902 kb on + strand at 39.903 kb on - strand at 40.038 kb on - strand at 40.038 kb on - strand at 40.043 kb on + strand at 40.044 kb on - strand at 40.044 kb on - strand at 40.147 kb on - strand, within BPHYT_RS00145 at 40.186 kb on - strand, within BPHYT_RS00145 at 40.244 kb on - strand at 40.276 kb on - strand at 40.276 kb on - strand at 40.308 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 38,285 - BPHYT_RS00130 0.59 -2.1 38,285 - BPHYT_RS00130 0.59 +0.8 38,310 + BPHYT_RS00130 0.61 +0.1 38,751 + BPHYT_RS00130 0.82 -0.5 38,758 + BPHYT_RS00130 0.82 -1.9 38,759 - BPHYT_RS00130 0.82 -0.0 38,759 - BPHYT_RS00130 0.82 -0.4 39,053 + -1.9 39,053 + +0.7 39,054 - -0.1 39,054 - +0.3 39,054 - +0.2 39,054 - +0.4 39,455 + -0.5 39,455 + -0.5 39,455 + -0.3 39,456 - -0.3 39,543 + BPHYT_RS00140 0.13 -0.8 39,592 - BPHYT_RS00140 0.25 -1.5 39,638 + BPHYT_RS00140 0.35 -0.8 39,638 + BPHYT_RS00140 0.35 +0.9 39,638 + BPHYT_RS00140 0.35 -0.8 39,902 + -0.9 39,903 - +0.9 40,038 - -0.6 40,038 - -1.3 40,043 + -0.1 40,044 - +0.1 40,044 - -1.3 40,147 - BPHYT_RS00145 0.57 -0.5 40,186 - BPHYT_RS00145 0.77 -0.9 40,244 - +0.4 40,276 - +0.2 40,276 - +0.3 40,308 + +0.0
Or see this region's nucleotide sequence