Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00125 and BPHYT_RS00130 are separated by 43 nucleotides BPHYT_RS00130 and BPHYT_RS00135 are separated by 93 nucleotides BPHYT_RS00135 and BPHYT_RS00140 are separated by 49 nucleotides BPHYT_RS00140 and BPHYT_RS00145 are separated by 114 nucleotides
BPHYT_RS00125: BPHYT_RS00125 - AraC family transcriptional regulator, at 35,941 to 36,990
_RS00125
BPHYT_RS00130: BPHYT_RS00130 - ATPase P, at 37,034 to 39,139
_RS00130
BPHYT_RS00135: BPHYT_RS00135 - hypothetical protein, at 39,233 to 39,436
_RS00135
BPHYT_RS00140: BPHYT_RS00140 - MerR family transcriptional regulator, at 39,486 to 39,917
_RS00140
BPHYT_RS00145: BPHYT_RS00145 - hypothetical protein, at 40,032 to 40,232
_RS00145
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 36.073 kb on + strand, within BPHYT_RS00125 at 36.254 kb on + strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.647 kb on - strand, within BPHYT_RS00125 at 36.717 kb on + strand, within BPHYT_RS00125 at 36.753 kb on - strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 37.070 kb on + strand at 37.403 kb on + strand, within BPHYT_RS00130 at 37.404 kb on - strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.986 kb on + strand, within BPHYT_RS00130 at 38.109 kb on + strand, within BPHYT_RS00130 at 38.110 kb on - strand, within BPHYT_RS00130 at 38.194 kb on - strand, within BPHYT_RS00130 at 38.285 kb on - strand, within BPHYT_RS00130 at 38.285 kb on - strand, within BPHYT_RS00130 at 38.310 kb on + strand, within BPHYT_RS00130 at 38.751 kb on + strand, within BPHYT_RS00130 at 38.758 kb on + strand, within BPHYT_RS00130 at 38.759 kb on - strand, within BPHYT_RS00130 at 38.759 kb on - strand, within BPHYT_RS00130 at 39.053 kb on + strand at 39.053 kb on + strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.456 kb on - strand at 39.543 kb on + strand, within BPHYT_RS00140 at 39.592 kb on - strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.902 kb on + strand at 39.903 kb on - strand at 40.038 kb on - strand at 40.038 kb on - strand at 40.043 kb on + strand at 40.044 kb on - strand at 40.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 36,073 + BPHYT_RS00125 0.13 +0.3 36,254 + BPHYT_RS00125 0.30 -0.2 36,255 - BPHYT_RS00125 0.30 -0.0 36,255 - BPHYT_RS00125 0.30 -0.4 36,647 - BPHYT_RS00125 0.67 -0.9 36,717 + BPHYT_RS00125 0.74 +0.3 36,753 - BPHYT_RS00125 0.77 -0.3 36,766 + BPHYT_RS00125 0.79 -1.5 36,766 + BPHYT_RS00125 0.79 +0.9 36,767 - BPHYT_RS00125 0.79 -0.7 36,767 - BPHYT_RS00125 0.79 -0.1 37,070 + +0.1 37,403 + BPHYT_RS00130 0.18 -1.3 37,404 - BPHYT_RS00130 0.18 +0.8 37,724 + BPHYT_RS00130 0.33 -0.5 37,724 + BPHYT_RS00130 0.33 -0.6 37,986 + BPHYT_RS00130 0.45 +0.1 38,109 + BPHYT_RS00130 0.51 -0.2 38,110 - BPHYT_RS00130 0.51 -2.3 38,194 - BPHYT_RS00130 0.55 +0.7 38,285 - BPHYT_RS00130 0.59 -2.1 38,285 - BPHYT_RS00130 0.59 +0.8 38,310 + BPHYT_RS00130 0.61 +0.1 38,751 + BPHYT_RS00130 0.82 -0.5 38,758 + BPHYT_RS00130 0.82 -1.9 38,759 - BPHYT_RS00130 0.82 -0.0 38,759 - BPHYT_RS00130 0.82 -0.4 39,053 + -1.9 39,053 + +0.7 39,054 - -0.1 39,054 - +0.3 39,054 - +0.2 39,054 - +0.4 39,455 + -0.5 39,455 + -0.5 39,455 + -0.3 39,456 - -0.3 39,543 + BPHYT_RS00140 0.13 -0.8 39,592 - BPHYT_RS00140 0.25 -1.5 39,638 + BPHYT_RS00140 0.35 -0.8 39,638 + BPHYT_RS00140 0.35 +0.9 39,638 + BPHYT_RS00140 0.35 -0.8 39,902 + -0.9 39,903 - +0.9 40,038 - -0.6 40,038 - -1.3 40,043 + -0.1 40,044 - +0.1 40,044 - -1.3
Or see this region's nucleotide sequence