Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30865 and BPHYT_RS30870 are separated by 109 nucleotides BPHYT_RS30870 and BPHYT_RS30875 are separated by 34 nucleotides BPHYT_RS30875 and BPHYT_RS30880 are separated by 457 nucleotides
BPHYT_RS30865: BPHYT_RS30865 - sugar ABC transporter ATP-binding protein, at 2,479,662 to 2,480,432
_RS30865
BPHYT_RS30870: BPHYT_RS30870 - chromate transporter, at 2,480,542 to 2,481,078
_RS30870
BPHYT_RS30875: BPHYT_RS30875 - chromate transporter, at 2,481,113 to 2,481,682
_RS30875
BPHYT_RS30880: BPHYT_RS30880 - peptidase S13, at 2,482,140 to 2,483,774
_RS30880
Position (kb) 2481
2482 Strain fitness (log2 ratio) -1
0
1
2
3 at 2480.164 kb on + strand, within BPHYT_RS30865 at 2480.164 kb on + strand, within BPHYT_RS30865 at 2480.165 kb on - strand, within BPHYT_RS30865 at 2480.284 kb on - strand, within BPHYT_RS30865 at 2480.696 kb on + strand, within BPHYT_RS30870 at 2480.697 kb on - strand, within BPHYT_RS30870 at 2481.114 kb on + strand at 2481.520 kb on + strand at 2481.867 kb on + strand at 2482.335 kb on + strand, within BPHYT_RS30880
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 2,480,164 + BPHYT_RS30865 0.65 -0.2 2,480,164 + BPHYT_RS30865 0.65 +0.8 2,480,165 - BPHYT_RS30865 0.65 +0.4 2,480,284 - BPHYT_RS30865 0.81 -0.4 2,480,696 + BPHYT_RS30870 0.29 -0.9 2,480,697 - BPHYT_RS30870 0.29 -1.1 2,481,114 + +0.3 2,481,520 + +3.6 2,481,867 + -0.4 2,482,335 + BPHYT_RS30880 0.12 +1.4
Or see this region's nucleotide sequence