Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28850
Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,022,283 | + | BPHYT_RS28840 | 0.72 | -1.5 | |
2,022,602 | - | +0.1 | |||
2,022,693 | - | BPHYT_RS28845 | 0.15 | -0.2 | |
2,022,869 | + | BPHYT_RS28845 | 0.55 | -2.7 | |
2,022,875 | + | BPHYT_RS28845 | 0.56 | -1.2 | |
2,022,929 | - | BPHYT_RS28845 | 0.69 | -0.6 | |
2,023,840 | + | BPHYT_RS28850 | 0.65 | +0.4 | |
2,023,840 | + | BPHYT_RS28850 | 0.65 | -0.3 | |
2,024,230 | + | +0.9 | |||
2,024,276 | + | +0.6 | |||
2,024,277 | - | +1.4 | |||
2,024,394 | + | +1.2 |
Or see this region's nucleotide sequence