Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28625 and BPHYT_RS28630 are separated by 13 nucleotides BPHYT_RS28630 and BPHYT_RS28635 are separated by 87 nucleotides BPHYT_RS28635 and BPHYT_RS28640 are separated by 463 nucleotides
BPHYT_RS28625: BPHYT_RS28625 - major facilitator transporter, at 1,976,474 to 1,977,805
_RS28625
BPHYT_RS28630: BPHYT_RS28630 - IclR family transcriptional regulator, at 1,977,819 to 1,978,610
_RS28630
BPHYT_RS28635: BPHYT_RS28635 - hypothetical protein, at 1,978,698 to 1,978,919
_RS28635
BPHYT_RS28640: BPHYT_RS28640 - ATPase, at 1,979,383 to 1,981,047
_RS28640
Position (kb) 1978
1979 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1977.725 kb on + strand at 1978.388 kb on - strand, within BPHYT_RS28630 at 1978.417 kb on + strand, within BPHYT_RS28630 at 1978.589 kb on + strand at 1978.699 kb on + strand at 1978.852 kb on - strand, within BPHYT_RS28635 at 1978.852 kb on - strand, within BPHYT_RS28635 at 1979.035 kb on + strand at 1979.335 kb on - strand at 1979.776 kb on - strand, within BPHYT_RS28640 at 1979.803 kb on + strand, within BPHYT_RS28640
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 1,977,725 + -1.8 1,978,388 - BPHYT_RS28630 0.72 -1.6 1,978,417 + BPHYT_RS28630 0.76 -1.0 1,978,589 + -0.8 1,978,699 + +0.1 1,978,852 - BPHYT_RS28635 0.69 +1.1 1,978,852 - BPHYT_RS28635 0.69 -0.2 1,979,035 + +1.0 1,979,335 - +0.8 1,979,776 - BPHYT_RS28640 0.24 -0.3 1,979,803 + BPHYT_RS28640 0.25 +3.1
Or see this region's nucleotide sequence